PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65084.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 491aa MW: 54716.2 Da PI: 8.1468

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.6	3.2e-20	101	200	3	99
EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k lt+sd+++ g +++pk++ae+ ++ ++ + lt +d +g W++++iyr++++r++lt+GW+ F + ++L +gD ++F +++++ l+v+ PKA65084.1 101 KNLTQSDANNGGGFSVPKDCAESLfppldySSRPPIQ-ILTATDVHGMPWTFRHIYRGTPQRHLLTTGWSTFLNKKKLVTGDLIIFL--RNENGDLCVG 196 6789***************999985555664.8999*****************************************..5689999* PP EE-S CS B3 96 vfrk 99 ++r+ PKA65084.1 197 FRRA 200 9996 PP
2	Auxin_resp	88.9	9.4e-30	218	301	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++Fev+Y+P a+t+eFvv+++kv++a+ +++ + mR+kma+e ed+s++++ G+v++v+ + p rWp+S+Wr+L+ PKA65084.1 218 AATLAVNGKPFEVTYYPAAGTPEFVVRASKVRAAMAINWRPDMRIKMALELEDFSKTSWfNGVVSSVQVSYPERWPKSPWRLLQ 301 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MQQENDKCVN SRLWHACAGE LVEIPPANSI VYYIPQGHAE HAQTPVNLNT PSPSIPPLLL 60 CLVTSVEYKA EPQTDDIFAR ISLLPLTGKE ASQEKPAFKK KNLTQSDANN GGGFSVPKDC 120 AESLFPPLDY SSRPPIQILT ATDVHGMPWT FRHIYRGTPQ RHLLTTGWST FLNKKKLVTG 180 DLIIFLRNEN GDLCVGFRRA REGVRLSGRV SAESVMEAAT LAVNGKPFEV TYYPAAGTPE 240 FVVRASKVRA AMAINWRPDM RIKMALELED FSKTSWFNGV VSSVQVSYPE RWPKSPWRLL 300 QVSWDEGSGV PEELKSVNPW QVEPASNLPP IHISPMPLPG KNIHIPPQHP GLQSPDSPSY 360 YAIVNPQFIS SRRSSLWYLP TASAVAGIQG ARHDNNQPAT NYQAAHCKVF MESEDVGRVI 420 DLSSIVSPED LYHRLSNMFG VHTSDLINTI DYRDATAVEV KHASNEPFFN FLKKVKRLTI 480 LKDPRGNSRE S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MQQENDKCVN SRLWHACAGE LVEIPPANSI VYYIPQGHAE HAQTPVNLNT PSPSIPPLLL  60
CLVTSVEYKA EPQTDDIFAR ISLLPLTGKE ASQEKPAFKK KNLTQSDANN GGGFSVPKDC  120
AESLFPPLDY SSRPPIQILT ATDVHGMPWT FRHIYRGTPQ RHLLTTGWST FLNKKKLVTG  180
DLIIFLRNEN GDLCVGFRRA REGVRLSGRV SAESVMEAAT LAVNGKPFEV TYYPAAGTPE  240
FVVRASKVRA AMAINWRPDM RIKMALELED FSKTSWFNGV VSSVQVSYPE RWPKSPWRLL  300
QVSWDEGSGV PEELKSVNPW QVEPASNLPP IHISPMPLPG KNIHIPPQHP GLQSPDSPSY  360
YAIVNPQFIS SRRSSLWYLP TASAVAGIQG ARHDNNQPAT NYQAAHCKVF MESEDVGRVI  420
DLSSIVSPED LYHRLSNMFG VHTSDLINTI DYRDATAVEV KHASNEPFFN FLKKVKRLTI  480
LKDPRGNSRE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	1e-125	ARF family protein