PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA64881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 543aa MW: 60843 Da PI: 5.3799 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.7e-21 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe+lF+ +++p++++r +L+ lgL+ rq+k+WFqNrR+++k PKA64881.1 16 KKRYHRHTPRQIQELEALFKVCPHPDEKQRMQLSLDLGLEPRQIKFWFQNRRTQMK 71 688999***********************************************998 PP | |||||||
2 | START | 84.4 | 2.5e-27 | 268 | 370 | 90 | 206 |
EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHH CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvk 186 + +m++e+ lsp+vp R+f f+Ry++q +++ wvi dvSvd lpSg li++++ng+sk++wve ++ +++ + h+l++ lv PKA64881.1 268 SVRYMYSEFLGLSPVVPsREFCFLRYCQQIEQDLWVITDVSVD----------------LPSGSLIQDMPNGYSKIVWVELMEIEEKNVtHQLYHDLVD 350 689************************************9997................68999**********************9999********* PP HHHHHHHHHHHHHTXXXXXX CS START 187 sglaegaktwvatlqrqcek 206 sg+a+ga++wvatlqr ce+ PKA64881.1 351 SGIAFGAQRWVATLQRMCER 370 ******************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence |
MDSSDEQDVS DSQRKKKRYH RHTPRQIQEL EALFKVCPHP DEKQRMQLSL DLGLEPRQIK 60 FWFQNRRTQM KAQHERADNC SLRAENDKIR CENIAMREAL KNVICPSCGS PQASEDSYFD 120 EQKLRMENAR LKDELDRVST ITSKYLGRPV TQLPPIQTLS GSSLDLTVGS YGSTGFTPSA 180 ISETEKQMMI ELATQAMEEL IRLAQTDEPL WTRFGSEGRE MLNLETYEKI FSRPVHQFRS 240 PDTRIETSRD SGDVMMSSLH LVDMFMNSVR YMYSEFLGLS PVVPSREFCF LRYCQQIEQD 300 LWVITDVSVD LPSGSLIQDM PNGYSKIVWV ELMEIEEKNV THQLYHDLVD SGIAFGAQRW 360 VATLQRMCER IACLTVTGDS PRDQWDVLSN GKAVREVTRI ANGQHPGNCI SLFRVNPSNP 420 NESNMLILQE SCTDPSGSLI VYVSIDPTSI NIAMSGEDPS FIPLLPSGFV VLPDGRPSFG 480 SHASSSSNPM GGSSGSVLTI AFQIMVSSLP SAKLNLESVA TVNHLIGATV QHIKAALSSL 540 GTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-157 | HD-ZIP family protein |