PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64622.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

DBB

Protein Properties

Length: 288aa MW: 31115.7 Da PI: 5.386

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.7e-06	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e e++ C ++ lC +C ++ H H++v PKA64622.1 4 QCNACEAAEAKVLCCADEAALCWECDEKVHAAnklagkHQRVL 46 7****99*******************6678888888775 PP
2	zf-B_box	24.4	6e-08	59	91	2	34
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + +kC+ +++ +fC +++ llC++C ++ H PKA64622.1 59 RIPKCDICQDASGYFFCLEDRALLCRNCDVAVH 91 5689***************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MKIQCNACEA AEAKVLCCAD EAALCWECDE KVHAANKLAG KHQRVLLLSA SSSSSSSSRI 60 PKCDICQDAS GYFFCLEDRA LLCRNCDVAV HTVNPCVSAH QRFLLTGIQV GLDSTVPALS 120 ESKEQSAKGA SERSPKPSKS NPSPISYSGE VNEAFSSQVN KEGSTGTLRA FFGGVSMAGT 180 VTDWTLDEFF RFTDFSQNYG YTDNGSSKAD SGKFGSSESS LLSRSFDEDM GPEDCMGQVP 240 EIPSPPTATG LHWPKNSDYV ASEFAAFVPD ISMQNRTAPT KRRRLWHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	285	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-75	DBB family protein