PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA64579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 39965 Da PI: 6.6373 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46.7 | 5.1e-15 | 283 | 308 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++++G C+yG++C+FaHg PKA64579.1 283 FKTELCNKWQESGDCPYGAQCQFAHG 308 79***********************8 PP | |||||||
2 | zf-CCCH | 19.9 | 1.3e-06 | 321 | 346 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 yktelCr + G tC+yG rC+F H+ PKA64579.1 321 YKTELCRMVLS-GdTCPYGHRCHFRHS 346 9******8888.56**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MEQELASGAN ADSCVPSSVP PLSFVPPDQE FDTPFLSSGS DNILLDGYQL MSSPEVIPCA 60 ITSNDQVPDT GPVLLSPSPA SFVEDDQQNV EVESRHYLAR LSLQYQRIAD RYELCLSQLH 120 DAVLEAEAIR LQNAQLRRAN DELSRSLNLT SGKHNNRYEI STGHPPVLLL NDQFRRLSLA 180 DHPPDGESPT SVFGFHENRR GRRCCGIDGK PLMLPKSISV RSSGYLKIHP PGIGGSAPNR 240 SNRLRSPTPV MQQKVFLGAW GSKKEGGEME EALELEAYNQ GMFKTELCNK WQESGDCPYG 300 AQCQFAHGIS ELRPVIRHPR YKTELCRMVL SGDTCPYGHR CHFRHSLSPV DRLSLRRPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 5e-60 | C3H family protein |