PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64511.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 727aa MW: 82967.5 Da PI: 6.8732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.8e-21	81	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++Ak+ GFsvr+++sk + ++ ++kr++vC + g + ++k++++k++r+r+ +r++C+a++++kk+ +w+v ++++ HnHel PKA64511.1 81 EYYSNFAKNNGFSVRRERSKGNpEHPMGVYKRELVCHRAGPPLPRKTDDVKRQRNRKASRCKCEAQMVIKKNAsagVTRWVVVNFSNVHNHELL 174 69***************999767777***************************************99877789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MMIKTLSRDG DHPGERRLCP CGDDQCYICI DGDDDHSFFE HIGSGDPNCL VGGTLVPPDI 60 TTAVPPPYIG QAFQSDEEAL EYYSNFAKNN GFSVRRERSK GNPEHPMGVY KRELVCHRAG 120 PPLPRKTDDV KRQRNRKASR CKCEAQMVIK KNASAGVTRW VVVNFSNVHN HELLESTEVR 180 YPSPYRNISA VDRERILALA KSGCTESLIL RALEMEKGVS PGQLAFGERD VKTFLQALKS 240 INRESEGSEL LKVCRVMKEK NPDFRYEFQL DENNKLEHVA WSYASSIRAF KVFGDVVVFD 300 TTFHLNAYDR PVGVWFGIDN YGHTLFFCCV ILLDDKLESF AWSLQAFLRL MDGKLPQTIM 360 TDLDMGLKDA VVAYLPDVKH AFCIWHVMSK LSSWFSALLG SEFERFRSEF QRINDSETIE 420 EFEHQWANMV VDFSFGADKH VSLLYSHRFN WALPYLQGWF FGGLLKVCQV LSIQSFFKGF 480 LNSQTRLKDF IEQVGVAVDF QNQAGEEATT QQNQQITKLR TCMPIEEHAS TILTHYAFDM 540 FQKEIMASTL FAVYETAREN YLVRHHLKSD GGHFVSCIPS DEDVHCSCKG FETTGILCRH 600 ALRVLSLKNC FFIPEKYLLT RWRQESSLFP ECSSQKYRSQ ALRSLASILI QESAITKDRF 660 DYVEWHLSRL LNHVKDMPGM DVAASNVELN SCFDDVVDIV TAPSVTRGRP RKVKQVLKAA 720 KDSHTSC

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MMIKTLSRDG DHPGERRLCP CGDDQCYICI DGDDDHSFFE HIGSGDPNCL VGGTLVPPDI  60
TTAVPPPYIG QAFQSDEEAL EYYSNFAKNN GFSVRRERSK GNPEHPMGVY KRELVCHRAG  120
PPLPRKTDDV KRQRNRKASR CKCEAQMVIK KNASAGVTRW VVVNFSNVHN HELLESTEVR  180
YPSPYRNISA VDRERILALA KSGCTESLIL RALEMEKGVS PGQLAFGERD VKTFLQALKS  240
INRESEGSEL LKVCRVMKEK NPDFRYEFQL DENNKLEHVA WSYASSIRAF KVFGDVVVFD  300
TTFHLNAYDR PVGVWFGIDN YGHTLFFCCV ILLDDKLESF AWSLQAFLRL MDGKLPQTIM  360
TDLDMGLKDA VVAYLPDVKH AFCIWHVMSK LSSWFSALLG SEFERFRSEF QRINDSETIE  420
EFEHQWANMV VDFSFGADKH VSLLYSHRFN WALPYLQGWF FGGLLKVCQV LSIQSFFKGF  480
LNSQTRLKDF IEQVGVAVDF QNQAGEEATT QQNQQITKLR TCMPIEEHAS TILTHYAFDM  540
FQKEIMASTL FAVYETAREN YLVRHHLKSD GGHFVSCIPS DEDVHCSCKG FETTGILCRH  600
ALRVLSLKNC FFIPEKYLLT RWRQESSLFP ECSSQKYRSQ ALRSLASILI QESAITKDRF  660
DYVEWHLSRL LNHVKDMPGM DVAASNVELN SCFDDVVDIV TAPSVTRGRP RKVKQVLKAA  720
KDSHTSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KRQRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein