PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA64494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | Whirly | ||||||||
Protein Properties | Length: 260aa MW: 29067.2 Da PI: 9.5008 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 192.4 | 6.7e-60 | 84 | 221 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 +yk+kaal v+++ p+f ldsg++k++++G +ll++a+a ++r+ydW++kq+f+ls+ e+++l+ l++k++ceffhdp++++s+eGkvrk lkvePlp PKA64494.1 84 IYKGKAALAVEPKPPEFAPLDSGAFKVSKEGYILLQFAPASGTRQYDWNRKQVFSLSVGEIGTLMGLGAKDACEFFHDPFKGKSEEGKVRKFLKVEPLP 182 9************************************************************************************************** PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 dG G+f+nlsv+n l++++es+++P++k+e +l+s+++ PKA64494.1 183 DGNGHFFNLSVQNRLMNVDESIYIPIAKSELIILNSAFN 221 **********************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MPTLPSQIPL HSATTPSLVP QNPLRSRIFA PQILLPRKKQ LHVCCRRSDY FDQQRIASRT 60 PEENSFTSPS PGTLANRVYA GYTIYKGKAA LAVEPKPPEF APLDSGAFKV SKEGYILLQF 120 APASGTRQYD WNRKQVFSLS VGEIGTLMGL GAKDACEFFH DPFKGKSEEG KVRKFLKVEP 180 LPDGNGHFFN LSVQNRLMNV DESIYIPIAK SELIILNSAF NFILPYLLGW HAFADTIKPE 240 DSSRNNFTSS RSGAELEWGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-106 | Whirly family protein |