PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64374.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 374aa MW: 42178.7 Da PI: 7.941

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.5e-09	46	66	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C++G+rC++ H+ PKA64374.1 46 VCTFYQK-GVCSFGSRCRYDHV 66 5****.***********7 PP
2	zf-CCCH	21.6	3.7e-07	156	178	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C+yG+rC+ Hg PKA64374.1 156 RPICS-FAAAGSCPYGERCPHVHG 178 78999.*************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
METWSSPSSS TYGSSRVLCK YFLHGACLKG EYCEFSHDWK DQTNNVCTFY QKGVCSFGSR 60 CRYDHVKVSR SQTSAALPSS SNSRPYKGRS ISVTGPCEVS LNGSFKPSLS PQAESSATSR 120 HVFSATKPAW TLDMDSHDFV DDDIVNIPNS NSLAERPICS FAAAGSCPYG ERCPHVHGDK 180 CLFCGKHCLH PYRLEEREEH LKLCQKNNKH LEALRQSQEI ECSVCLDRVL SKPTPAERKF 240 GLLSECDHPF CISCIRNWRS NSPSGGMDVN NALRACPICR KLSYFVIPSI IWYSSREEKQ 300 EIIDNYKTKL KTIDCKYFDF GNGTCPFGTS CFYKHAFRDG RLEEVVLRHL DAEDGSTVIV 360 KNIRLSDFLS NLRL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

METWSSPSSS TYGSSRVLCK YFLHGACLKG EYCEFSHDWK DQTNNVCTFY QKGVCSFGSR  60
CRYDHVKVSR SQTSAALPSS SNSRPYKGRS ISVTGPCEVS LNGSFKPSLS PQAESSATSR  120
HVFSATKPAW TLDMDSHDFV DDDIVNIPNS NSLAERPICS FAAAGSCPYG ERCPHVHGDK  180
CLFCGKHCLH PYRLEEREEH LKLCQKNNKH LEALRQSQEI ECSVCLDRVL SKPTPAERKF  240
GLLSECDHPF CISCIRNWRS NSPSGGMDVN NALRACPICR KLSYFVIPSI IWYSSREEKQ  300
EIIDNYKTKL KTIDCKYFDF GNGTCPFGTS CFYKHAFRDG RLEEVVLRHL DAEDGSTVIV  360
KNIRLSDFLS NLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-151	C3H family protein