PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64365.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 447aa MW: 49153.9 Da PI: 8.9538

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.2e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PKA64365.1 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	12.6	0.0004	137	158	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k + +s++k H++t+ PKA64365.1 137 SCHRCSKAYAVHSDFKAHLKTC 158 8*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MSNMFNAGTS PPPALPAPSL SPHDSSSCKR KRRPAGTPDP EAEVVSLSPR TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SGAEARKRVF VCPEPSCLHH HPSHALGDLV 120 GIKKHFRRKH SSHKQWSCHR CSKAYAVHSD FKAHLKTCGT RGHSCDCGRV FSRVESFIEH 180 QDMCSASRVR PAAATASTQS RPSINEHNNF IRPPPLPPSP AANSAATAWF ASTVQRPPNA 240 AYQLQPPTGC HMRKLTSGIE LQLLPAPSMC RNPEPAIPSP EHSLSIDEAQ ATKLELSVGP 300 SAAAVAVAEE NQTAMARAKI ECEALEQLRL AVAEKAVADE TRLQARRQKE LAELDLSNAK 360 RIRQQAQMEL NKTLALRDHA LKRIHATLLQ ITCFSCKQHF NLQKPAAAGM LISDDVSFGA 420 SHMSSVVTDG EGEDENLDQA ALPKGSI

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MSNMFNAGTS PPPALPAPSL SPHDSSSCKR KRRPAGTPDP EAEVVSLSPR TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SGAEARKRVF VCPEPSCLHH HPSHALGDLV  120
GIKKHFRRKH SSHKQWSCHR CSKAYAVHSD FKAHLKTCGT RGHSCDCGRV FSRVESFIEH  180
QDMCSASRVR PAAATASTQS RPSINEHNNF IRPPPLPPSP AANSAATAWF ASTVQRPPNA  240
AYQLQPPTGC HMRKLTSGIE LQLLPAPSMC RNPEPAIPSP EHSLSIDEAQ ATKLELSVGP  300
SAAAVAVAEE NQTAMARAKI ECEALEQLRL AVAEKAVADE TRLQARRQKE LAELDLSNAK  360
RIRQQAQMEL NKTLALRDHA LKRIHATLLQ ITCFSCKQHF NLQKPAAAGM LISDDVSFGA  420
SHMSSVVTDG EGEDENLDQA ALPKGSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-121	C2H2 family protein