PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64205.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 408aa MW: 46611.8 Da PI: 4.1601

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	143	227	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + aL++a + + +r++l+ W ev+kk+ + + +rs qC+++++ l+k+ykk+k+ + + sss+++yf++++ PKA64205.1 143 WSEETTFALLDAWGDCYLQNGRKSLRSDEWGEVAKKVsQCLKTSRSEAQCRNRLDTLKKKYKKEKAKYPDY-ASSSSNWVYFQKMD 227 ***********************************7889************************97.67778******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MDDMEDDARY PPNPYNQSYR RPLPSSNPPN SNVRNSSYPS QVPHGYANDD GDDDDDERNE 60 VDEPANEEDD DDQDDEDNFD RGYSRVRNDV EEEDDDDVED DSSESRGKRR RLDRYARGFE 120 FVPRVAPSPA AKQPLSRTSS ADWSEETTFA LLDAWGDCYL QNGRKSLRSD EWGEVAKKVS 180 QCLKTSRSEA QCRNRLDTLK KKYKKEKAKY PDYASSSSNW VYFQKMDELM SSPPPTSAAI 240 RQDPQLHRLS CGIDAGEYVF ASSKLYANRS NGVNEMRDSP GDTASEEEGE EVDDDSDGLP 300 PRREKLAASS ESSFRMLADS IQRFGEIYQK IENSRRQQLA ELERMRKEFH RDLELQKRDI 360 LERAQAEIAR LSQEAGEEVE DEEERVDDDG NDGDDDDYID GSAENLSG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MDDMEDDARY PPNPYNQSYR RPLPSSNPPN SNVRNSSYPS QVPHGYANDD GDDDDDERNE  60
VDEPANEEDD DDQDDEDNFD RGYSRVRNDV EEEDDDDVED DSSESRGKRR RLDRYARGFE  120
FVPRVAPSPA AKQPLSRTSS ADWSEETTFA LLDAWGDCYL QNGRKSLRSD EWGEVAKKVS  180
QCLKTSRSEA QCRNRLDTLK KKYKKEKAKY PDYASSSSNW VYFQKMDELM SSPPPTSAAI  240
RQDPQLHRLS CGIDAGEYVF ASSKLYANRS NGVNEMRDSP GDTASEEEGE EVDDDSDGLP  300
PRREKLAASS ESSFRMLADS IQRFGEIYQK IENSRRQQLA ELERMRKEFH RDLELQKRDI  360
LERAQAEIAR LSQEAGEEVE DEEERVDDDG NDGDDDDYID GSAENLSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-62	Trihelix family protein