PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63886.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 548aa MW: 63156.7 Da PI: 8.2117

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	139	186	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT Ed l+++ +++ +++W tIa+ g+ R +c+ rw ++l PKA63886.1 139 KRPWTMTEDRVLLEYLAKHNTENWITIAKNSGLQRDSRSCRFRWVTHL 186 569*****************************************9886 PP
2	Myb_DNA-binding	41.9	2.3e-13	194	235	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +++E+ ++++++++G++ W++I r+ + gRt++++k++w++ PKA63886.1 194 PISPDEETMIIRYHAMFGNK-WSLICRYSP-GRTDNEIKNYWNT 235 679***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MTLSHRKVRG EDLLSPSEQP TSEDPLPLFL SLSALEIWRR RSSGEKDDKI IVVCADDPEF 60 RHYNDIKDLA PHRLAEIRRF FEDCIHQKHM NFLALQMCIL SVPSRRRRAA AGIPRRNCHL 120 RPSSSGYTSY AKEMGANRKR PWTMTEDRVL LEYLAKHNTE NWITIAKNSG LQRDSRSCRF 180 RWVTHLDPQL KKEPISPDEE TMIIRYHAMF GNKWSLICRY SPGRTDNEIK NYWNTRIKRC 240 KKSAQPLYPP DIQCRVLNQS NRSPLALVVP PTGEFSLVAL HQLQPVLPLS SSSEVSTHLP 300 PFSSLPLNDN MDFQVNHNNN DQFQLHNWSE FDSLQSPPLD LLSPDPHHSN SVFANSQEQG 360 IYEEETLDVQ LLNWQRSYAY DVEDLLAIDS PIQTNNSFGY FQKNQVNKEI LPTDQKTMTM 420 TTSTIEQGKI PGSPDQLEEF KVVQEEDPLR PPGVNEEILL RKRESGRRDQ YKKDYKQRLF 480 SFAGRFTSIS RCILRDCGDF FLSISFSFLL LPALSSSAWL AGGIYGRVAV ESGRFVGIGV 540 RIRWCKVI

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MTLSHRKVRG EDLLSPSEQP TSEDPLPLFL SLSALEIWRR RSSGEKDDKI IVVCADDPEF  60
RHYNDIKDLA PHRLAEIRRF FEDCIHQKHM NFLALQMCIL SVPSRRRRAA AGIPRRNCHL  120
RPSSSGYTSY AKEMGANRKR PWTMTEDRVL LEYLAKHNTE NWITIAKNSG LQRDSRSCRF  180
RWVTHLDPQL KKEPISPDEE TMIIRYHAMF GNKWSLICRY SPGRTDNEIK NYWNTRIKRC  240
KKSAQPLYPP DIQCRVLNQS NRSPLALVVP PTGEFSLVAL HQLQPVLPLS SSSEVSTHLP  300
PFSSLPLNDN MDFQVNHNNN DQFQLHNWSE FDSLQSPPLD LLSPDPHHSN SVFANSQEQG  360
IYEEETLDVQ LLNWQRSYAY DVEDLLAIDS PIQTNNSFGY FQKNQVNKEI LPTDQKTMTM  420
TTSTIEQGKI PGSPDQLEEF KVVQEEDPLR PPGVNEEILL RKRESGRRDQ YKKDYKQRLF  480
SFAGRFTSIS RCILRDCGDF FLSISFSFLL LPALSSSAWL AGGIYGRVAV ESGRFVGIGV  540
RIRWCKVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	9e-40	MYB family protein