PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63884.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 777aa MW: 88350.5 Da PI: 7.3132

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	177	224	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +W+ Ed++l ++v+++ ++W ++ar g+ R +c+ rw ++l PKA63884.1 177 KRPWSVLEDQILTEYVTKHNADNWVAVARNSGLQRDSRSCRFRWVTHL 224 569*****************************************9886 PP
2	Myb_DNA-binding	43.1	1e-13	232	273	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + + eE+ ++++ ++++G++ W+ I+r+++ gRt++++k++w++ PKA63884.1 232 PISHEEEMRIIQFHAMFGNK-WSIISRYLP-GRTDNEIKNYWNT 273 6689**************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MLATMHTILV SALQENRSTR TPTDSFHSFD DSLVEFSSTS PSEHFASAES SREPLVLKNK 60 APRWHEQLQC WCLNFKGRVT VASVKNFQLV AAVDSSHDIP PTEQEKVILQ FGKIGKDIFT 120 MDYRFQFHLA ADVPPPEYLA RTAVFNFLIP VRRRSSRHRR EVATVASRWF KMGENRKRPW 180 SVLEDQILTE YVTKHNADNW VAVARNSGLQ RDSRSCRFRW VTHLDPQLKK EPISHEEEMR 240 IIQFHAMFGN KWSIISRYLP GRTDNEIKNY WNTRIKRCKK TGQPLYPPEI QPRVIINHSS 300 SSSTVHPAPM APVASVSHHL QVVSPPLSLT STENMNLQGH HNNSNQFQFH NESKLDNLDP 360 PPLSVDLLSP DLHHSNRSFS NSLEQEIYGK DTLDAQLLNW QKSDAVDVED ILVNDSPIQP 420 TDNSFKKKAN RKTLLTDQMT MTMRTNAMKY KKIPESYDQL NPLSLLPLVP LSLPPKQVNG 480 GLLDRQDVNL VSNTMLMKSS PCDSIGSNEY IPEKQTNREI LQTNQMTITL RTSTTKQEKT 540 PKLHNQLKSL PLSSLVPLSL PLEQFNGDLL NRRDDNLVNS ILLMKQSPCD STDSNEHVPE 600 KQLNEETLQT DQMTITMRTS IMKKEKVPKL QDLLKPLSLS PLALVSLSPE HVNIDLVDRQ 660 DNLVSTQDDK LASSTPLMES SSCDSINSNV FLLFLQNHKV KIGSLEQEIE SSVIQEITMI 720 TATSPIHSFW NGDGNVSDQP PSPTRHIKVL IKKMQSMVPT LPVEDELIPG TFTWKLE

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MLATMHTILV SALQENRSTR TPTDSFHSFD DSLVEFSSTS PSEHFASAES SREPLVLKNK  60
APRWHEQLQC WCLNFKGRVT VASVKNFQLV AAVDSSHDIP PTEQEKVILQ FGKIGKDIFT  120
MDYRFQFHLA ADVPPPEYLA RTAVFNFLIP VRRRSSRHRR EVATVASRWF KMGENRKRPW  180
SVLEDQILTE YVTKHNADNW VAVARNSGLQ RDSRSCRFRW VTHLDPQLKK EPISHEEEMR  240
IIQFHAMFGN KWSIISRYLP GRTDNEIKNY WNTRIKRCKK TGQPLYPPEI QPRVIINHSS  300
SSSTVHPAPM APVASVSHHL QVVSPPLSLT STENMNLQGH HNNSNQFQFH NESKLDNLDP  360
PPLSVDLLSP DLHHSNRSFS NSLEQEIYGK DTLDAQLLNW QKSDAVDVED ILVNDSPIQP  420
TDNSFKKKAN RKTLLTDQMT MTMRTNAMKY KKIPESYDQL NPLSLLPLVP LSLPPKQVNG  480
GLLDRQDVNL VSNTMLMKSS PCDSIGSNEY IPEKQTNREI LQTNQMTITL RTSTTKQEKT  540
PKLHNQLKSL PLSSLVPLSL PLEQFNGDLL NRRDDNLVNS ILLMKQSPCD STDSNEHVPE  600
KQLNEETLQT DQMTITMRTS IMKKEKVPKL QDLLKPLSLS PLALVSLSPE HVNIDLVDRQ  660
DNLVSTQDDK LASSTPLMES SSCDSINSNV FLLFLQNHKV KIGSLEQEIE SSVIQEITMI  720
TATSPIHSFW NGDGNVSDQP PSPTRHIKVL IKKMQSMVPT LPVEDELIPG TFTWKLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	9e-42	MYB family protein