PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63632.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 305aa MW: 33413.3 Da PI: 5.0793

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.3	4.5e-37	44	140	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rrkC++dC lapyfpa+q+++f+ +h+lFG+s++ k+l+++ r++ams++++++earardPv G++++il+l++q++ +el+ + PKA63632.1 44 ACAACKFQRRKCTPDCLLAPYFPADQNARFQSAHRLFGVSKIKKILETVAAGSRSEAMSTIIFQSEARARDPVGGCYRLILELERQIDICFSELQNV 140 7**************************************************************************************9888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MNAPLPPPVS SSAAAGGTLA PFSHRRRSSS APTTRSLLPS SSSACAACKF QRRKCTPDCL 60 LAPYFPADQN ARFQSAHRLF GVSKIKKILE TVAAGSRSEA MSTIIFQSEA RARDPVGGCY 120 RLILELERQI DICFSELQNV LRQIAFFRAQ VEPPAISSLY SNLDIAATPG DHHPQQSSYN 180 YLLYGAPDQS EEHAPEIGVD DHGGGYNEMN GFEININGEM ELPPEIALED VSRRLRAEGG 240 DHEDVKPLVE KYDARHAFAT GEDDLISSRI EMKDDENSLG QIQENDLKTA ASLFTLTNCN 300 TFAHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-36	LBD family protein