PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA63630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 16994.4 Da PI: 8.6056 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.3 | 7.7e-36 | 34 | 134 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aC++C+++rrkC+++C+lapyfpa ++++f+n+h++FG++++l++l+ + +++r +am++++++A+ar rdP G++++i+++q+++++++ael+++++ PKA63630.1 34 ACCSCRHQRRKCVSGCALAPYFPAGEEANFENAHRIFGVAKILRILELVAPDQRAAAMRAVIFHANARSRDPAGGCTRLISDMQRHIDRARAELHRINQ 132 7***********************************************************************************************999 PP DUF260 100 el 101 ++ PKA63630.1 133 QI 134 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MNSLTSKIPN PNPSSLSPAV ISSTAAAANS GSTACCSCRH QRRKCVSGCA LAPYFPAGEE 60 ANFENAHRIF GVAKILRILE LVAPDQRAAA MRAVIFHANA RSRDPAGGCT RLISDMQRHI 120 DRARAELHRI NQQINCFEMQ MAAAAANTLS DGAALDWGC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-26 | LBD family protein |