PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63628.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 461aa MW: 50172.9 Da PI: 9.6431

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PKA63628.1 81 FICEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12	0.00064	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PKA63628.1 157 WKCEKCSKKYAVQSDWKAHSKIC 179 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MMKGKITPLQ QQQAEENMSN LTTASGEASV SSNQQSSFIS PNFNPNPPLP AKKKRNLPGN 60 PDPEAEVVAL SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRSSKEVRKK 120 VYICPEVTCV HHEPTRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESVRAMAANP LLTNQQHLLF PPPPPPPAPP 240 APPANFDPLP HLPLHPQLPH LMRPASNDAA VASGNSGCGN GLRELTMKRE AQPPSFDSVP 300 SWLADLPSSL YPHDNPLPPF PGPAAAPAHM SATALLQKAA QMGATMSRPA RSGIGLSSSR 360 QEAVTGGDGS SGSGQFLKDL MMGSLPEASG FDGGSFAGVL RSTRRENGQG RSEEGGNEGL 420 TRDFLGLRAL SQRDFLSMAG FEPCISSSSS SPFEQQSKKP W

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MMKGKITPLQ QQQAEENMSN LTTASGEASV SSNQQSSFIS PNFNPNPPLP AKKKRNLPGN  60
PDPEAEVVAL SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRSSKEVRKK  120
VYICPEVTCV HHEPTRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESVRAMAANP LLTNQQHLLF PPPPPPPAPP  240
APPANFDPLP HLPLHPQLPH LMRPASNDAA VASGNSGCGN GLRELTMKRE AQPPSFDSVP  300
SWLADLPSSL YPHDNPLPPF PGPAAAPAHM SATALLQKAA QMGATMSRPA RSGIGLSSSR  360
QEAVTGGDGS SGSGQFLKDL MMGSLPEASG FDGGSFAGVL RSTRRENGQG RSEEGGNEGL  420
TRDFLGLRAL SQRDFLSMAG FEPCISSSSS SPFEQQSKKP W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	120	KLKQRSSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	5e-96	C2H2 family protein