PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63437.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 777aa MW: 89752.9 Da PI: 6.668

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA++vGF +++++s +s ++g++ k ++C kegkre +++++ ++ r r rt+C+a++kv k++ dg +++t+++leHnH+++ PKA63437.1 81 DFYNQYARRVGFGTKIRRSWYSLDDGQCNKFMLTCCKEGKREYKNSERCSSYRLRLAARTDCQARIKVLKKYaDGLFHLTEVNLEHNHPVN 171 6********************************************9999*************99999*************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MADESHSGGL SERDVISFQD SSGGMSMLEP AGHVVDKIQN EIGGDESLID EEESKGKIAD 60 EGDDGVPRVG MVFKTFEEVY DFYNQYARRV GFGTKIRRSW YSLDDGQCNK FMLTCCKEGK 120 REYKNSERCS SYRLRLAART DCQARIKVLK KYADGLFHLT EVNLEHNHPV NPSMSRFFRS 180 HKDLNDGAKK LPVMRGKGNR DLPSGENEQV HSSIKAQTSF LAKDDLDALH QFLARMQTSC 240 FNFFHLMDLD EDGCLKNIFW ADGRCKAAYQ YFDDVVTFDT TYLTSNYEVP LVSFVGVNHH 300 GHLVLFGCGL ISNRNVESYR WLFKAWLSCM SGTYPSAIIT DQCKAIQEAV AEVFPGSRHR 360 LCLWHIMKRI QESLGAYAEY KGIKATMKKV VYDCLKLIDF EEEWSNMIEK YALEDSEWLR 420 SLHENRHSWV PAFVKETFWA GMSSTQHKEN MNSFFDGYIY PKTSLKQFLC KYEATLKSKF 480 EREAQADRDS FHKSPQLISK FYMEDQLRQL YTVDMFKKFQ EEVKAILYCI PSLVRVDGQI 540 SIFEVKEPFR MKDGNQIENK DYEVTYNSNE LEVRCICCSF QMTGILCRHI LSVLNFLEVY 600 EIPSQYIVER WRKDYKHIHV VPCFSNDLAA NGPLERYNNL FKHCLKFIEV GATSDGLYEY 660 ALKIISEVTD ELLASDPSAS DIQPRTCNPF SDKRNVGNEN DEIYDISEVR QRGQPLKKRK 720 ESLVEKIAKT SKRKVPQRKH AVACQNEVLR MAPEAPQFDS HIWTQDSINL AVYSVHI

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MADESHSGGL SERDVISFQD SSGGMSMLEP AGHVVDKIQN EIGGDESLID EEESKGKIAD  60
EGDDGVPRVG MVFKTFEEVY DFYNQYARRV GFGTKIRRSW YSLDDGQCNK FMLTCCKEGK  120
REYKNSERCS SYRLRLAART DCQARIKVLK KYADGLFHLT EVNLEHNHPV NPSMSRFFRS  180
HKDLNDGAKK LPVMRGKGNR DLPSGENEQV HSSIKAQTSF LAKDDLDALH QFLARMQTSC  240
FNFFHLMDLD EDGCLKNIFW ADGRCKAAYQ YFDDVVTFDT TYLTSNYEVP LVSFVGVNHH  300
GHLVLFGCGL ISNRNVESYR WLFKAWLSCM SGTYPSAIIT DQCKAIQEAV AEVFPGSRHR  360
LCLWHIMKRI QESLGAYAEY KGIKATMKKV VYDCLKLIDF EEEWSNMIEK YALEDSEWLR  420
SLHENRHSWV PAFVKETFWA GMSSTQHKEN MNSFFDGYIY PKTSLKQFLC KYEATLKSKF  480
EREAQADRDS FHKSPQLISK FYMEDQLRQL YTVDMFKKFQ EEVKAILYCI PSLVRVDGQI  540
SIFEVKEPFR MKDGNQIENK DYEVTYNSNE LEVRCICCSF QMTGILCRHI LSVLNFLEVY  600
EIPSQYIVER WRKDYKHIHV VPCFSNDLAA NGPLERYNNL FKHCLKFIEV GATSDGLYEY  660
ALKIISEVTD ELLASDPSAS DIQPRTCNPF SDKRNVGNEN DEIYDISEVR QRGQPLKKRK  720
ESLVEKIAKT SKRKVPQRKH AVACQNEVLR MAPEAPQFDS HIWTQDSINL AVYSVHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	711	720	QRGQPLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-141	FAR1 family protein