PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63155.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 338aa MW: 38829.5 Da PI: 8.3737

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.3e-11	2	37	12	48
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l ++v ++G+ W+tI++ ++ gR +kqc++rw+++l PKA63155.1 2 LTKLVDMHGPIKWSTISNSLP-GRIGKQCRERWYNHL 37 7799***99******.***********97 PP
2	Myb_DNA-binding	54.2	3.3e-17	43	86	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT eE+ +++a+ +lG++ W+ Ia++++ gRt++++k++w++ PKA63155.1 43 RDAWTSEEERVIIEAHMELGNK-WTEIANRLP-GRTDNSIKNYWHS 86 789*****************.*****.*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MLTKLVDMHG PIKWSTISNS LPGRIGKQCR ERWYNHLKPE IKRDAWTSEE ERVIIEAHME 60 LGNKWTEIAN RLPGRTDNSI KNYWHSSLKK KAKFYWKTDM NAKTCAVSSQ LVETSKFEEK 120 KECLELMASQ RIALRESHFS GDHESQTFDR DFVHEESDSP LKSEANIFTR EIHQNEEPWR 180 STQKCQKSDP DDYDSKCLKS PQIEGLGVPS SSMLSHFNSR ILSSPIGHLT RSTSAESILR 240 SAARNFTNIP SIIRRREVQA PLVPDSFSSN NSRIQDSCIS NENRADSIIK GYQNRFNRGK 300 ILKSVEKKLD FEMKDTNFDG SSNLLSLDAS ELRGREAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-44	MYB family protein