PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62453.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TALE

Protein Properties

Length: 429aa MW: 46593.9 Da PI: 5.9908

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.9	2.9e-07	379	411	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + PKA62453.1 379 WPYPTEDDKARLVQETGLQLKQINNWFINQRKR 411 69*****************************87 PP
2	ELK	27.5	7e-10	332	353	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ PKA62453.1 332 ELKHELKHGYKEKIVDIREEIL 353 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MAYHNHLAPE MTLPHYAEQR LEGATSVITA TAPDHLGRAT TASGKAGKPV AEEQIGAGGG 60 GAPTWLNSAI LRQQGQQFAD GSFLHLQTAS DNSSSAATAG GGAAIAGQWM PRGQFRGDDD 120 VPVSGDSIIA AAISDTAAGS AGETTAAVAA PGEAVEGTWQ NARYKAEILA HPLYEQLLSA 180 HVACLRIATP VDQLPRIDAQ LAQSQHVVAK YAVLGGGNGC QILSGEDKEL DQFMTHYVLL 240 LCSFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVSPGE GTGATMSDDD DEQADSETNF 300 YDGSLDCPDT MGFGPLVPTE SERSLMERVR QELKHELKHG YKEKIVDIRE EILRKRRAGK 360 LPGDTTSTLK SWWQSHSKWP YPTEDDKARL VQETGLQLKQ INNWFINQRK RNWHNNPSSS 420 SSLKSKRKR

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MAYHNHLAPE MTLPHYAEQR LEGATSVITA TAPDHLGRAT TASGKAGKPV AEEQIGAGGG  60
GAPTWLNSAI LRQQGQQFAD GSFLHLQTAS DNSSSAATAG GGAAIAGQWM PRGQFRGDDD  120
VPVSGDSIIA AAISDTAAGS AGETTAAVAA PGEAVEGTWQ NARYKAEILA HPLYEQLLSA  180
HVACLRIATP VDQLPRIDAQ LAQSQHVVAK YAVLGGGNGC QILSGEDKEL DQFMTHYVLL  240
LCSFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVSPGE GTGATMSDDD DEQADSETNF  300
YDGSLDCPDT MGFGPLVPTE SERSLMERVR QELKHELKHG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSTLK SWWQSHSKWP YPTEDDKARL VQETGLQLKQ INNWFINQRK RNWHNNPSSS  420
SSLKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	409	429	RKRNWHNNPSSSSSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-168	TALE family protein