PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62147.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 753aa MW: 85841.1 Da PI: 7.745

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	39.3	9.2e-13	45	79	1	33
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C Cg ++ Tp++Rrgp+g++tLCnaCG+ + k+ PKA62147.1 45 CLRCGISSksTPHMRRGPEGPRTLCNACGIAWTKT 79 6668777777**********************996 PP
2	FAR1	85.5	8.3e-27	119	204	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA vGFsvrks+s ks++n + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k + +g ++vt++ +HnH+ PKA62147.1 119 EFYNRYAGFVGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITPTGSYRVTEFMADHNHQ 204 6*******************6666.999*********9999.999**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MHAPVPAGGV AYGGSGHPPM EYGQERDAEI QNNDGDDGLE GSLRCLRCGI SSKSTPHMRR 60 GPEGPRTLCN ACGIAWTKTL NKQGKMRKVI ESDIRIEDTS SKVAPEIDME FESEDKAYEF 120 YNRYAGFVGF SVRKSSSDKS SENITRSRTF VCSREGFRKD KKGAKEVKRP RPETRIGCPA 180 RMTIKITPTG SYRVTEFMAD HNHQPAPPST THLLRSQRIT MEFQAAEAEL SDDSGATPRS 240 TNEPVIRQIG SLRNINFLPV EYRNFLRSKR MKAMQMGDAG AVLKYLQSMQ LDSQSFFYAI 300 QVDEDDKMTN IFWADERSMA DFNCFGDVVC FDTTYKINSY GRPFAPFLGV NHHKQTVIFG 360 AALLYDESAE SFKWLFETFK IAMCGKQPKT IITDQSMTIG CAVASVWPGT SHRFCVWHVY 420 QSAAKHLNHI FQGSKTFAKD FGRCVYDFEE EEDFLLAWRT MLDKYDLRNN EWLSKLFDDR 480 EKWALAYNRH VFCADIKSTL QNESLSGVLK KYLSPQMDLL SFFKHYERVV DEHRYSELQA 540 DFHASQSFPR IPPSKMLRQA ANLYTPVVFE IFRREFEMFM DCMLYSCGEA DSVSEYKVAV 600 TEKPKEHYVR FDSSDCSVAC NCKKFEFMGI QCCHALKVLD FRNIKELPLK YFLKRWTKNA 660 KTVKQRDSEE AAKETCGPKS PTTISVHAPL SSYAQQQGFQ NLSQFSQDSP VSDLHQHSFH 720 GSTHLGQAFS TSVHPQPFLG IAHLNPQSSD QSH

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MHAPVPAGGV AYGGSGHPPM EYGQERDAEI QNNDGDDGLE GSLRCLRCGI SSKSTPHMRR  60
GPEGPRTLCN ACGIAWTKTL NKQGKMRKVI ESDIRIEDTS SKVAPEIDME FESEDKAYEF  120
YNRYAGFVGF SVRKSSSDKS SENITRSRTF VCSREGFRKD KKGAKEVKRP RPETRIGCPA  180
RMTIKITPTG SYRVTEFMAD HNHQPAPPST THLLRSQRIT MEFQAAEAEL SDDSGATPRS  240
TNEPVIRQIG SLRNINFLPV EYRNFLRSKR MKAMQMGDAG AVLKYLQSMQ LDSQSFFYAI  300
QVDEDDKMTN IFWADERSMA DFNCFGDVVC FDTTYKINSY GRPFAPFLGV NHHKQTVIFG  360
AALLYDESAE SFKWLFETFK IAMCGKQPKT IITDQSMTIG CAVASVWPGT SHRFCVWHVY  420
QSAAKHLNHI FQGSKTFAKD FGRCVYDFEE EEDFLLAWRT MLDKYDLRNN EWLSKLFDDR  480
EKWALAYNRH VFCADIKSTL QNESLSGVLK KYLSPQMDLL SFFKHYERVV DEHRYSELQA  540
DFHASQSFPR IPPSKMLRQA ANLYTPVVFE IFRREFEMFM DCMLYSCGEA DSVSEYKVAV  600
TEKPKEHYVR FDSSDCSVAC NCKKFEFMGI QCCHALKVLD FRNIKELPLK YFLKRWTKNA  660
KTVKQRDSEE AAKETCGPKS PTTISVHAPL SSYAQQQGFQ NLSQFSQDSP VSDLHQHSFH  720
GSTHLGQAFS TSVHPQPFLG IAHLNPQSSD QSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	172	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-134	FAR1 family protein