PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61935.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 671aa MW: 75286 Da PI: 8.8304

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	7.9e-19	125	223	3	98
EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k lt+sd+++ g +++pk+ ae+ + k+ + l+ +d +g W++++iyr++++r++lt+GW+ F ++++L gD v+F +++++ l+v+ PKA61935.1 125 KNLTQSDANSGGSFSVPKNIAESLfprldySARKPLQ-FLVAKDVHGVGWSFRHIYRGTPQRHLLTTGWSAFLNSKKLAFGDLVIFL--RDENGDLRVG 220 6789***************999884444454.57779****************************************..55788889 PP EE- CS B3 96 vfr 98 ++r PKA61935.1 221 FRR 223 998 PP
2	Auxin_resp	99.3	5.2e-33	290	372	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++Fev+Y+P ++t+eFvvk++kv++a+++++ +GmRfkmafe +++s++++ +G+v+ v+ +dp+rWpnS+Wr+ PKA61935.1 290 AATLAANGKPFEVTYYPATGTPEFVVKASKVRAAMEMNWRPGMRFKMAFELDNFSKTSWsMGVVSVVQPSDPIRWPNSPWRLF 372 68899****************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MQGFVGQRME AEKATGGIEE DDKCVNHLLW RSCAGELVEV PPVNSMVYYI PQGHAEHALT 60 PVNFDSRLNV PALVPCLVTS VKYMAEPETD DIFAKIGMVP LSGNGFDCNR EDEPVSQEKL 120 EFEKKNLTQS DANSGGSFSV PKNIAESLFP RLDYSARKPL QFLVAKDVHG VGWSFRHIYR 180 GTPQRHLLTT GWSAFLNSKK LAFGDLVIFL RDENGDLRVG FRRVREKKRT SDDRLEPPSL 240 PPPASMANQI CRALSSYLKD RSRSKNVCTS ICGQEMRPRG KVRADSVIEA ATLAANGKPF 300 EVTYYPATGT PEFVVKASKV RAAMEMNWRP GMRFKMAFEL DNFSKTSWSM GVVSVVQPSD 360 PIRWPNSPWR LFQVLWDEGS GVPQELNSVS PWQLEPTSKM PPIILSSIPL SRMKVHIPHH 420 SDIPVGIQSP ATIFPHWRSS LYLPSSMQGA RHSFLYGIPP KDISNGNLQC GIFHAAFLLP 480 DRTYSPPPTV SGAQVITSDS SFKEQTMTNE EENSKEGKKK PETVPLRLFG TPVYPDEQLS 540 LRISSSSVAS SSDREEINIP KVRHHSSSSQ KADTLATNYQ AAHCKVFMEY ENVGRVIDLS 600 AIVSLEDLYY RLLNMFEVHI SDLVDRIVFR DAANAEVKLG TDEPFMKFLK KVKRLTILRR 660 SRGNSKEKLY K

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MQGFVGQRME AEKATGGIEE DDKCVNHLLW RSCAGELVEV PPVNSMVYYI PQGHAEHALT  60
PVNFDSRLNV PALVPCLVTS VKYMAEPETD DIFAKIGMVP LSGNGFDCNR EDEPVSQEKL  120
EFEKKNLTQS DANSGGSFSV PKNIAESLFP RLDYSARKPL QFLVAKDVHG VGWSFRHIYR  180
GTPQRHLLTT GWSAFLNSKK LAFGDLVIFL RDENGDLRVG FRRVREKKRT SDDRLEPPSL  240
PPPASMANQI CRALSSYLKD RSRSKNVCTS ICGQEMRPRG KVRADSVIEA ATLAANGKPF  300
EVTYYPATGT PEFVVKASKV RAAMEMNWRP GMRFKMAFEL DNFSKTSWSM GVVSVVQPSD  360
PIRWPNSPWR LFQVLWDEGS GVPQELNSVS PWQLEPTSKM PPIILSSIPL SRMKVHIPHH  420
SDIPVGIQSP ATIFPHWRSS LYLPSSMQGA RHSFLYGIPP KDISNGNLQC GIFHAAFLLP  480
DRTYSPPPTV SGAQVITSDS SFKEQTMTNE EENSKEGKKK PETVPLRLFG TPVYPDEQLS  540
LRISSSSVAS SSDREEINIP KVRHHSSSSQ KADTLATNYQ AAHCKVFMEY ENVGRVIDLS  600
AIVSLEDLYY RLLNMFEVHI SDLVDRIVFR DAANAEVKLG TDEPFMKFLK KVKRLTILRR  660
SRGNSKEKLY K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	1e-146	ARF family protein