PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61358.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 1026aa MW: 112809 Da PI: 8.0769

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	411	487	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C++dls +++yhrrhkvCevh+k+pvv+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ PKA61358.1 411 CLVDDCKSDLSGCRDYHRRHKVCEVHAKTPVVIVGGQEQRFCQQCSRFHLLLEFDEVKRSCRKRLDGHNRRRRKPQP 487 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence
MSCLQLSSAI SDLFLTAFVN QLSKCHIYPS FLLFFFSSSS SSSSSFPFTV SPLSRRVLFA 60 LARKYPFPSS YKSYSEPWKE KQNKPNVSLF GFAALAALFS FFFFFLGGPF FFSLFLDLFR 120 SDFDSWKAPN QFSHLLCYPF PSSYKSYSEP WKEKQNKPNV SLFGFAALAA LFSFFFFFLG 180 GPFFFSLFLD LFRSDFDSWK APNQFSHLLC VSTDCSPVST LSLSLSLSLS LVWRWAFLFF 240 FSFPPSSFST CYCFKLSSPV IENYGPFLPP VLFSLDVWYL VVVFGRVGEE EGKQREGEVR 300 EIEKGYFTTF MDWDSKMPTW DLPELEQHVA EANLSSVVDP SSGGSGSGRR HGDLDCSIDL 360 KLGGFRDFGL PEKWKEQRPA STAVVVPSMA AATGPSKRPR GPSNSGQNVS CLVDDCKSDL 420 SGCRDYHRRH KVCEVHAKTP VVIVGGQEQR FCQQCSRFHL LLEFDEVKRS CRKRLDGHNR 480 RRRKPQPESL MNSGNLFPSM HGSMLTFYPQ NLLATTNNVK AEEGTIFSHP LASMHFTDRL 540 PPPPHFASTF IRSLKNGEAE MAVGGGASCQ PLVDSISSAA ESSSSKIVFS DSSDCALSLL 600 SSPTRTSGIN LGHMVPADGI PMGQPLLSSL HYGEGLGRFS SCARPDSRVV SATGFSCSGV 660 DDENLGTVLV PDGGEGSLHC QSMFHVGEEA ASDEVSQSIP FSCAAAGGVV RPRKADGGGA 720 AAGSGGEREG KGIMESSFGF NSKRSRWNHG DEFSGFRLLI EHETISSSRV IPSRRLLPLS 780 TISLLVLFSS ISKIRVPKMK GDEIQSGVLH ELGSFVLSTL RFPLATIHSA GSDEFAPAPR 840 LPLPRALAAT GRLPPLSPAG LVSLLLGISL TLMLCGSVTF VIGFMMMPWV MAMVMFLYFC 900 GIISSVSSLW KALIGLASSL DLLRTCPREN TAEVMWSIYI IAFANVDVDV IYIRGLDLEI 960 QLYGRRKSLY GLLYLGLLVR PSSVYANVNR GVTSLLIPWS HSFPCARQPT SLASSCVRVR 1020 PHLPLD

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence

MSCLQLSSAI SDLFLTAFVN QLSKCHIYPS FLLFFFSSSS SSSSSFPFTV SPLSRRVLFA  60
LARKYPFPSS YKSYSEPWKE KQNKPNVSLF GFAALAALFS FFFFFLGGPF FFSLFLDLFR  120
SDFDSWKAPN QFSHLLCYPF PSSYKSYSEP WKEKQNKPNV SLFGFAALAA LFSFFFFFLG  180
GPFFFSLFLD LFRSDFDSWK APNQFSHLLC VSTDCSPVST LSLSLSLSLS LVWRWAFLFF  240
FSFPPSSFST CYCFKLSSPV IENYGPFLPP VLFSLDVWYL VVVFGRVGEE EGKQREGEVR  300
EIEKGYFTTF MDWDSKMPTW DLPELEQHVA EANLSSVVDP SSGGSGSGRR HGDLDCSIDL  360
KLGGFRDFGL PEKWKEQRPA STAVVVPSMA AATGPSKRPR GPSNSGQNVS CLVDDCKSDL  420
SGCRDYHRRH KVCEVHAKTP VVIVGGQEQR FCQQCSRFHL LLEFDEVKRS CRKRLDGHNR  480
RRRKPQPESL MNSGNLFPSM HGSMLTFYPQ NLLATTNNVK AEEGTIFSHP LASMHFTDRL  540
PPPPHFASTF IRSLKNGEAE MAVGGGASCQ PLVDSISSAA ESSSSKIVFS DSSDCALSLL  600
SSPTRTSGIN LGHMVPADGI PMGQPLLSSL HYGEGLGRFS SCARPDSRVV SATGFSCSGV  660
DDENLGTVLV PDGGEGSLHC QSMFHVGEEA ASDEVSQSIP FSCAAAGGVV RPRKADGGGA  720
AAGSGGEREG KGIMESSFGF NSKRSRWNHG DEFSGFRLLI EHETISSSRV IPSRRLLPLS  780
TISLLVLFSS ISKIRVPKMK GDEIQSGVLH ELGSFVLSTL RFPLATIHSA GSDEFAPAPR  840
LPLPRALAAT GRLPPLSPAG LVSLLLGISL TLMLCGSVTF VIGFMMMPWV MAMVMFLYFC  900
GIISSVSSLW KALIGLASSL DLLRTCPREN TAEVMWSIYI IAFANVDVDV IYIRGLDLEI  960
QLYGRRKSLY GLLYLGLLVR PSSVYANVNR GVTSLLIPWS HSFPCARQPT SLASSCVRVR  1020
PHLPLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	468	485	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-43	SBP family protein