PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61300.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 396aa MW: 43112.5 Da PI: 4.5964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	175	226	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i A+e++++L+ PKA61300.1 175 QRMTHIAVERNRRRQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 226 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDQKEVEDDY SRSFESAGGG SGDSLEMVDY MLNTPPSAQP QNNGLDRLSF ADVMQFADVY 60 RPKAGKLAGD QEENLNCFFK FPSLLSPPPP PPLAPPPPPP QQQIVAGERT PQLQELEVEE 120 EEEEEPRFSE NTASSVQQMG MGGGGGGGGD GQVVEGKSRR KRTRSMKTSE EVESQRMTHI 180 AVERNRRRQM NEHLRVLRSL MPSSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL 240 YGGGEAQPRA IAGDPTLPLA MQQPHQSPPP PFFPALPLPG GASAAAGGLD IAGETAGVRE 300 DSAENKSCLA DIEVRLLGAD GLIKILSRRR PGQLLKTIAA LEDMQFSILH TNITTIEQTV 360 LYSFNVKITG EITACSAEEI ANTVQQILSF IDSSTI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDQKEVEDDY SRSFESAGGG SGDSLEMVDY MLNTPPSAQP QNNGLDRLSF ADVMQFADVY  60
RPKAGKLAGD QEENLNCFFK FPSLLSPPPP PPLAPPPPPP QQQIVAGERT PQLQELEVEE  120
EEEEEPRFSE NTASSVQQMG MGGGGGGGGD GQVVEGKSRR KRTRSMKTSE EVESQRMTHI  180
AVERNRRRQM NEHLRVLRSL MPSSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL  240
YGGGEAQPRA IAGDPTLPLA MQQPHQSPPP PFFPALPLPG GASAAAGGLD IAGETAGVRE  300
DSAENKSCLA DIEVRLLGAD GLIKILSRRR PGQLLKTIAA LEDMQFSILH TNITTIEQTV  360
LYSFNVKITG EITACSAEEI ANTVQQILSF IDSSTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	187	RMTHIAVERNRR
2	236	240	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	3e-78	bHLH family protein