PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61274.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 1203aa MW: 134816 Da PI: 8.9331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	1086	1111	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C C++sF k++L++H r+ + PKA61274.1 1086 YMCDieGCNMSFAKKHDLTTHKRNvC 1111 899999****************9877 PP
2	zf-C2H2	11.4	0.00096	1110	1133	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L +H ++H PKA61274.1 1110 VCPekGCGKKFFSHKYLLQHRKVH 1133 69999*****************99 PP
3	zf-C2H2	11	0.0014	1169	1195	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ +Cg +F+ s++ rH r+ H PKA61274.1 1169 YVCEesNCGLTFRFVSDFSRHKRKtgH 1195 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1203 aa Download sequence
MAAGTSSPEV LPWLKSLPVA PEYHPTLSEF KDPIAYILKI EPEASRYGIC KIVPPLPAAP 60 KPTAIANLNH SFSARSPAGD PTFTTRQQQI GFCPRRLRPV QKPVWQSGNR YTLSQFEAKA 120 RGFERAHLRK SCRKISSSSL SPLKVESLFW EAAADKPFSV EYANDMPGSG FDQLRNEESA 180 AANVGETGWN MRGVARAKGS LLRFMKEEIP GVTSPMVYVA MMYSWFAWHV EDHDLHSMNY 240 LHMGAGKTWY GVPRDAALAF EEVVRVHGYG GEVNALITFA TLAEKTTVMS PEVLIGLGIP 300 CCRLVQNAGE FVVTFPGSYH SGFSHGFNCG EASNIATPKW LRVAKEAAVR RAATNCPPMV 360 SHYQLLYALA LSLFLRSPAN AIPTPKSSRL REKLRSAGEI MVKETFVQNV ISINELLTIL 420 LDDYSSCVIL PQSTSDNPLF SDLQLNSQIK VKPRIALGLR SEETKEEKSA SDHTVGLSRI 480 WTRSLSGFSA EEENTLTVYR RRKLTTSNIS NFGASEFHNS THESKNLVEK KDDKLLSNAY 540 LDQGLLSCVS CGILSYACVA IIRPKEAAIR YLMSRDYNSF DDQVVRFDAN CSLDNGSSRK 600 IFESDFDSNF GNRDRIHSSV QLSVVHEGSR SDAKVDCGLS ALDLLVSAYG ELSDSEEDPF 660 HHLGVETVGC DSRDSLIANC QNMESGIDLT RCAGNNLLAE TSKYVNCCSK LTRSDRQGFL 720 CGGKTGFPAN NQHENINGVM QSVLIDDTEK NTNSIVKHAD QVFLKSHDMK IRKLEAGSTG 780 NCVSSFSDST ITGSTVSITS SNMDDSMKNS CTTAEQEPDK DSARMHVFCL EHAVEVEKQL 840 RLIGGANIML LCHPEYPEIE SEAKVRAEEL GLNYQWKEVH YREASKEDKE KIRLAIEDEQ 900 AIPCNSDWAV KLGINLYYSV KLSQSPLYRK QLPYNAVIYK SFAQKLPSKQ KISGRVAQRP 960 KKITVAGKWC GKVWMSNQVH PILANQNLLD DEQNADQNSD SHTDRENENQ SIVARRTSSK 1020 NKAKDRRKST KKRKRSSKSR SRTNVEPPSM RLRKQWKTSE EASTKKKLRK KTEKAPAIAP 1080 EQDREYMCDI EGCNMSFAKK HDLTTHKRNV CPEKGCGKKF FSHKYLLQHR KVHVDDRPLK 1140 CPWKGCKVTF KWAWARTEHI RVHTGERPYV CEESNCGLTF RFVSDFSRHK RKTGHYSAKK 1200 SRG

Sequence ? help Back to Top

Protein Sequence Length: 1203 aa Download sequence

MAAGTSSPEV LPWLKSLPVA PEYHPTLSEF KDPIAYILKI EPEASRYGIC KIVPPLPAAP  60
KPTAIANLNH SFSARSPAGD PTFTTRQQQI GFCPRRLRPV QKPVWQSGNR YTLSQFEAKA  120
RGFERAHLRK SCRKISSSSL SPLKVESLFW EAAADKPFSV EYANDMPGSG FDQLRNEESA  180
AANVGETGWN MRGVARAKGS LLRFMKEEIP GVTSPMVYVA MMYSWFAWHV EDHDLHSMNY  240
LHMGAGKTWY GVPRDAALAF EEVVRVHGYG GEVNALITFA TLAEKTTVMS PEVLIGLGIP  300
CCRLVQNAGE FVVTFPGSYH SGFSHGFNCG EASNIATPKW LRVAKEAAVR RAATNCPPMV  360
SHYQLLYALA LSLFLRSPAN AIPTPKSSRL REKLRSAGEI MVKETFVQNV ISINELLTIL  420
LDDYSSCVIL PQSTSDNPLF SDLQLNSQIK VKPRIALGLR SEETKEEKSA SDHTVGLSRI  480
WTRSLSGFSA EEENTLTVYR RRKLTTSNIS NFGASEFHNS THESKNLVEK KDDKLLSNAY  540
LDQGLLSCVS CGILSYACVA IIRPKEAAIR YLMSRDYNSF DDQVVRFDAN CSLDNGSSRK  600
IFESDFDSNF GNRDRIHSSV QLSVVHEGSR SDAKVDCGLS ALDLLVSAYG ELSDSEEDPF  660
HHLGVETVGC DSRDSLIANC QNMESGIDLT RCAGNNLLAE TSKYVNCCSK LTRSDRQGFL  720
CGGKTGFPAN NQHENINGVM QSVLIDDTEK NTNSIVKHAD QVFLKSHDMK IRKLEAGSTG  780
NCVSSFSDST ITGSTVSITS SNMDDSMKNS CTTAEQEPDK DSARMHVFCL EHAVEVEKQL  840
RLIGGANIML LCHPEYPEIE SEAKVRAEEL GLNYQWKEVH YREASKEDKE KIRLAIEDEQ  900
AIPCNSDWAV KLGINLYYSV KLSQSPLYRK QLPYNAVIYK SFAQKLPSKQ KISGRVAQRP  960
KKITVAGKWC GKVWMSNQVH PILANQNLLD DEQNADQNSD SHTDRENENQ SIVARRTSSK  1020
NKAKDRRKST KKRKRSSKSR SRTNVEPPSM RLRKQWKTSE EASTKKKLRK KTEKAPAIAP  1080
EQDREYMCDI EGCNMSFAKK HDLTTHKRNV CPEKGCGKKF FSHKYLLQHR KVHVDDRPLK  1140
CPWKGCKVTF KWAWARTEHI RVHTGERPYV CEESNCGLTF RFVSDFSRHK RKTGHYSAKK  1200
SRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	500	534	RRRKLTTSNISNFGASEFHNSTHESKNLVEKKDDK
2	1031	1036	KKRKRS
3	1031	1057	KKRKRSSKSRSRTNVEPPSMRLRKQWK
4	1031	1065	RRRKLTTSNISNFGASEFHNSTHESKNLVEKKDDK
5	1032	1058	KKRKRSSKSRSRTNVEPPSMRLRKQWK
6	1032	1066	RRRKLTTSNISNFGASEFHNSTHESKNLVEKKDDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein