PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA61042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C3H | ||||||||
Protein Properties | Length: 506aa MW: 54513.7 Da PI: 7.8173 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 132 | 156 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd C F H+ PKA61042.1 132 GEKDCAHYMLTRTCKFGDACIFDHP 156 7889********************8 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 183 | 209 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG+rCkF+H++ PKA61042.1 183 PGEPDCPYFMKTQKCKYGSRCKFNHPK 209 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.8e-12 | 234 | 258 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+a+tG Ck+G++CkF+H++ PKA61042.1 234 EPVCAFYAKTGKCKFGANCKFNHPK 258 789********************96 PP | |||||||
4 | zf-CCCH | 36.9 | 6.3e-12 | 307 | 331 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ PKA61042.1 307 GETDCPFYLKTGSCKYGATCRYNHP 331 6789********************9 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 393 | 416 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+GdrCkF H+ PKA61042.1 393 EIECDYYMKTGHCKFGDRCKFDHP 416 568********************9 PP | |||||||
6 | zf-CCCH | 39.7 | 7.9e-13 | 449 | 472 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCk+G +C+F H+p PKA61042.1 449 VACPFYMKTGTCKFGVTCRFDHPP 472 68********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence |
MAKQIYYGSS YGGSGTGAYS LRGVEPYLPA AVGSATRYSA DALGVAELGD MASSLQSNGL 60 TSAVWRAADG SAVASSVDAG SKRTAEAFYN QSIMATHSTI GQSDPLLSTY YVLKRPRLVS 120 GSHLPVYPQR PGEKDCAHYM LTRTCKFGDA CIFDHPIWVP EGGIPDWKEV PLVPTSDSLP 180 ERPGEPDCPY FMKTQKCKYG SRCKFNHPKE LTARGQVQCN ESAGYSELPE RPSEPVCAFY 240 AKTGKCKFGA NCKFNHPKDL EIESVAKDNG KVEHTNDTAL DGSNGLKGFV PGPAQLHNSK 300 GLPIRPGETD CPFYLKTGSC KYGATCRYNH PDRIFVNPPF TANLSNAIVT PTASTLPIGV 360 INPAVSYIPT IDPRLTQAAV GVGQVIYPQR PGEIECDYYM KTGHCKFGDR CKFDHPLDRS 420 APSLAVAKQQ PQQAVKLTLA GLPRREGSVA CPFYMKTGTC KFGVTCRFDH PPPGEAIAKA 480 TGLQGSEAGI MTESEELEMV AASSFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-168 | C3H family protein |