PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60901.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 811aa MW: 90938.5 Da PI: 5.9675

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114	8.7e-36	132	208	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+ e+k yhrrh+vC ++ ap+v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k PKA60901.1 132 RCQVPGCEVDIGELKGYHRRHRVCLRCAYAPSVMIEGETKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNRRRRRKP 208 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
MEFPPSFPLL ESVPAVVTGD DPSSSSVWDW GNLLDFAIDA DDSFILSDLP HLPSPQPPPL 60 EETPPQAEPA PEGSSSRVRK RDPRLVCANY LAGRVPCACP EVDEKEMEGD EEEAVVGGRK 120 RARAGVVNVG VRCQVPGCEV DIGELKGYHR RHRVCLRCAY APSVMIEGET KRYCQQCGKF 180 HVLLDFDEDK RSCRRKLERH NRRRRRKPAD LKSVVEKENV CQGKQLGETQ KESTCTAVED 240 DGVRNKLVDG DMLLDCQNGL GCDEPSSLGL ENTQTDSPRS FATSVDAIVD DERLDKPKST 300 ISSTTCDNKS TYSSVCPTGR ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYVRPGC 360 TILTLFIAMP KYMWVKLSQD GEVRIKQLIN APESLLMGRG NILIYLSNVI IQILKDGTSH 420 INVMIESKAP RLHCVQPTYF EAGKAMEFIA CGSNLDQPNL RFLVSFAGRY LVCDVYRVMS 480 HRGSSYCGNS CFSMNNSEHE LFAVNVKQTV PEVFGPAFIE VENESGVSNF IPVLIGDKQI 540 CHELESLQGI FTRSPSLHVE NIASSAVCGD TATFRRLNFT QQIDMSDLLL DIAWLLKEPC 600 EDTTEYFWGS LNVERVVHLL RFAIQNDLIS VLKAVVRYVD IGFSKSMNLS VDADTGLLLN 660 YMKNAKEILN QKRQHMEISV QDPWHVRYKD TLPVDPSAIS AETPKNLNEG ERNAFAFAST 720 SAADNNESTL IITKDINSSK SPCSLLRSYW PCKFWAVNTS STPVTRTRAD LFVTATLSMC 780 FVVCILLLNP HKPSDFSDYM RRRLLGHSNH Q

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

MEFPPSFPLL ESVPAVVTGD DPSSSSVWDW GNLLDFAIDA DDSFILSDLP HLPSPQPPPL  60
EETPPQAEPA PEGSSSRVRK RDPRLVCANY LAGRVPCACP EVDEKEMEGD EEEAVVGGRK  120
RARAGVVNVG VRCQVPGCEV DIGELKGYHR RHRVCLRCAY APSVMIEGET KRYCQQCGKF  180
HVLLDFDEDK RSCRRKLERH NRRRRRKPAD LKSVVEKENV CQGKQLGETQ KESTCTAVED  240
DGVRNKLVDG DMLLDCQNGL GCDEPSSLGL ENTQTDSPRS FATSVDAIVD DERLDKPKST  300
ISSTTCDNKS TYSSVCPTGR ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYVRPGC  360
TILTLFIAMP KYMWVKLSQD GEVRIKQLIN APESLLMGRG NILIYLSNVI IQILKDGTSH  420
INVMIESKAP RLHCVQPTYF EAGKAMEFIA CGSNLDQPNL RFLVSFAGRY LVCDVYRVMS  480
HRGSSYCGNS CFSMNNSEHE LFAVNVKQTV PEVFGPAFIE VENESGVSNF IPVLIGDKQI  540
CHELESLQGI FTRSPSLHVE NIASSAVCGD TATFRRLNFT QQIDMSDLLL DIAWLLKEPC  600
EDTTEYFWGS LNVERVVHLL RFAIQNDLIS VLKAVVRYVD IGFSKSMNLS VDADTGLLLN  660
YMKNAKEILN QKRQHMEISV QDPWHVRYKD TLPVDPSAIS AETPKNLNEG ERNAFAFAST  720
SAADNNESTL IITKDINSSK SPCSLLRSYW PCKFWAVNTS STPVTRTRAD LFVTATLSMC  780
FVVCILLLNP HKPSDFSDYM RRRLLGHSNH Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	GRKRARA
2	190	208	KRSCRRKLERHNRRRRRKP
3	194	206	RRKLERHNRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	1e-161	SBP family protein