PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60676.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 902aa MW: 99797.4 Da PI: 5.2693

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	776	819	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++ + el+++av+q+G + ++ I ++ +R+++q+k ++ + PKA60676.1 776 RTRWSKTDTELFYQAVQQFGAD-FTMIQVLFP-TRSREQVKAKFKN 819 78******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MFPVFNSVNN VSRPDTAQNG DAGIRNSDSD FDIFGSCKPT EKMVKFCPKP RTKTNSPLAV 60 PSKPSASELP FTAAAFHDAA NSSSPVNISV SISPGFPSSS VASPSHVRDL EGGAEYSLLN 120 HLSQTERGEL QQGTAGISEC MDYIDENSQS ASKSETMFQF RSKELVVQSP NSIHDLEDPG 180 GILTSCFDSV LERSSEFHAS SKSTDICNVP VKSIGTGGIN APPSKTDILN SEEMLNSSTV 240 DESLYVANDV YDASMPTLNM STSSSQPMAI SSELLMTQNS FLTTKKSELN VEALKVAEVN 300 PNLQVDSSKL QKEESTVSST TESPNDIFLL SDIPTVKQKG KFQPKRLLVI KEGKKSKSVS 360 FVIPKTGELA ASTKCQPELS MHNSMKKHPF FVETMHGQFM DDSLGSLANS DRLSKVDNGG 420 LAWEDAKESS DHDTLSQPIL NSAEFGSSGF DSLLPETNVA NSASIGTGPI ESASSPLGSL 480 LTGCDSMDAY DPAFLSGVIF ESSTVQIHNS SSFDMIDERA CVGTANHLSS QILMDNEHPE 540 VGEVGQERHI FEEAVQPNLK EKCTLHEENS EARKSPMKRL NRNNKMKSNI LDSISSDDEG 600 DENATISGVD EENDDDDEDE DYKVEDRPRK RHRASKKSNV MLSEHEKETK NHKNVSRKST 660 SEGKAPQKKR LPRGSRRKST SRQVNKALLE VPFDELDRSQ LFLRDLIRLA DVKERTSNKI 720 AAVFKRSLPN QRNDRNEKNY SGEEQRQDHT GEDENESTHY AAPKLNYHTY MDRTNRTRWS 780 KTDTELFYQA VQQFGADFTM IQVLFPTRSR EQVKAKFKNE QRKHPMQIAD ALVCRTKDHS 840 HFDKVIQHLQ AQAELKAKLA ENSNQTTNSP DEADNKEEEN TKPNKAEQEV NGFVGSPNKE 900 KS

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MFPVFNSVNN VSRPDTAQNG DAGIRNSDSD FDIFGSCKPT EKMVKFCPKP RTKTNSPLAV  60
PSKPSASELP FTAAAFHDAA NSSSPVNISV SISPGFPSSS VASPSHVRDL EGGAEYSLLN  120
HLSQTERGEL QQGTAGISEC MDYIDENSQS ASKSETMFQF RSKELVVQSP NSIHDLEDPG  180
GILTSCFDSV LERSSEFHAS SKSTDICNVP VKSIGTGGIN APPSKTDILN SEEMLNSSTV  240
DESLYVANDV YDASMPTLNM STSSSQPMAI SSELLMTQNS FLTTKKSELN VEALKVAEVN  300
PNLQVDSSKL QKEESTVSST TESPNDIFLL SDIPTVKQKG KFQPKRLLVI KEGKKSKSVS  360
FVIPKTGELA ASTKCQPELS MHNSMKKHPF FVETMHGQFM DDSLGSLANS DRLSKVDNGG  420
LAWEDAKESS DHDTLSQPIL NSAEFGSSGF DSLLPETNVA NSASIGTGPI ESASSPLGSL  480
LTGCDSMDAY DPAFLSGVIF ESSTVQIHNS SSFDMIDERA CVGTANHLSS QILMDNEHPE  540
VGEVGQERHI FEEAVQPNLK EKCTLHEENS EARKSPMKRL NRNNKMKSNI LDSISSDDEG  600
DENATISGVD EENDDDDEDE DYKVEDRPRK RHRASKKSNV MLSEHEKETK NHKNVSRKST  660
SEGKAPQKKR LPRGSRRKST SRQVNKALLE VPFDELDRSQ LFLRDLIRLA DVKERTSNKI  720
AAVFKRSLPN QRNDRNEKNY SGEEQRQDHT GEDENESTHY AAPKLNYHTY MDRTNRTRWS  780
KTDTELFYQA VQQFGADFTM IQVLFPTRSR EQVKAKFKNE QRKHPMQIAD ALVCRTKDHS  840
HFDKVIQHLQ AQAELKAKLA ENSNQTTNSP DEADNKEEEN TKPNKAEQEV NGFVGSPNKE  900
KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-34	MYB_related family protein