PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60606.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 720aa MW: 83127.2 Da PI: 8.7363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.2	7.9e-25	61	150	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +Y+++vGF vr++ks++s++++++++r+fvC++eg+++++ + k++r+r +tr gC a+++v ++++gkw+vtkle+eH+H + PKA60606.1 61 EYYIAYGSRVGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHTKRVIYdDGKKKRKRGTTREGCMAMIEVIRKDRGKWVVTKLETEHTHMV 150 59**************************************9987647889999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MEEPLVEDYS LIRDSAMDLN GNSSDPPIAL PLGGLGVELN AYDLGEPSIG MEFDSDEAAK 60 EYYIAYGSRV GFGVRMNKSR RSRKDDTVIM RRFVCTREGF HTKRVIYDDG KKKRKRGTTR 120 EGCMAMIEVI RKDRGKWVVT KLETEHTHMV ALPEKVRPQA DRHLISPDSA LILGKSSGGF 180 SNQKNFNRGI RVSPFNEEGE AQDLVEYLKR KQAKNPAFFY AIQVDNNNCM TNVFWADVKA 240 RMAYQDFGDA VTFDTSYKKT KYMMPFAMFR GVNHHLQSVS FGCALIMDET KGSYVWLFET 300 WLTAMGGIHP ISLFTDRDKA MEGAISRVFP RTRHCYCKLH IVSRCKQKLS DVFVKYPTLK 360 RELKECINGS ETIEEFDTRW EYILDKYNQW DNVWLQSLFD CRPRWASVYQ NDLFSPELSS 420 SQRSESLNKF FKRNFNMKTS LLVFVSKLDQ VMMSQYEKEF QEDIAIVYSK PPLKTPSPIE 480 KQASEIYTKA VFEKFQEEFI QSLGYYVEKI EDGSISKYSV TKEEDIRKSC IVCFSESDKM 540 VNCSCCKFER CGILCRHVLR VFFVVGIRLL PDEYFLKRWT RNAMRSVVLH ERVNESGQDF 600 QENLIAWYND LCLDAVRYGM EGAVSTETYK VAKLALQKAF TEVVAAKNSQ KKGQQNMQRF 660 TRLQKMQYKV PLPKLQPKKI PSKMTEHDGG GGSIQISKDD KFGDVEALQG DGYLHKSRTF

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MEEPLVEDYS LIRDSAMDLN GNSSDPPIAL PLGGLGVELN AYDLGEPSIG MEFDSDEAAK  60
EYYIAYGSRV GFGVRMNKSR RSRKDDTVIM RRFVCTREGF HTKRVIYDDG KKKRKRGTTR  120
EGCMAMIEVI RKDRGKWVVT KLETEHTHMV ALPEKVRPQA DRHLISPDSA LILGKSSGGF  180
SNQKNFNRGI RVSPFNEEGE AQDLVEYLKR KQAKNPAFFY AIQVDNNNCM TNVFWADVKA  240
RMAYQDFGDA VTFDTSYKKT KYMMPFAMFR GVNHHLQSVS FGCALIMDET KGSYVWLFET  300
WLTAMGGIHP ISLFTDRDKA MEGAISRVFP RTRHCYCKLH IVSRCKQKLS DVFVKYPTLK  360
RELKECINGS ETIEEFDTRW EYILDKYNQW DNVWLQSLFD CRPRWASVYQ NDLFSPELSS  420
SQRSESLNKF FKRNFNMKTS LLVFVSKLDQ VMMSQYEKEF QEDIAIVYSK PPLKTPSPIE  480
KQASEIYTKA VFEKFQEEFI QSLGYYVEKI EDGSISKYSV TKEEDIRKSC IVCFSESDKM  540
VNCSCCKFER CGILCRHVLR VFFVVGIRLL PDEYFLKRWT RNAMRSVVLH ERVNESGQDF  600
QENLIAWYND LCLDAVRYGM EGAVSTETYK VAKLALQKAF TEVVAAKNSQ KKGQQNMQRF  660
TRLQKMQYKV PLPKLQPKKI PSKMTEHDGG GGSIQISKDD KFGDVEALQG DGYLHKSRTF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	115	RRSRKDDTVIMRRFVCTREGFHTKRVIYDDGKKKRK
2	111	136	KKKRKRGTTREGCMAMIEVIRKDRGK
3	112	137	KKKRKRGTTREGCMAMIEVIRKDRGK
4	113	138	KKKRKRGTTREGCMAMIEVIRKDRGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-146	FAR1 family protein