PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60257.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

DBB

Protein Properties

Length: 404aa MW: 43037.1 Da PI: 7.594

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	5.9e-07	157	196	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e + ++C+ ++ lC +C + H+ H PKA60257.1 157 PACDYCSESSAVIYCRADSARLCVSCDRQVHEAnalsrkH 196 67****99*****************99655555555 PP
2	zf-B_box	25	4e-08	199	242	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 ++C++++ ++ C ++ lC+dC + H+ H++ PKA60257.1 199 SQICDNCNAAAASVRCAADGLVLCQDCDFDAHSAadegagwHRR 242 689****99*******************657777777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MLSHRMEMRI STTSSRMVAG RRGNRGTVVG WRAGRRRQDK RRAVRATDAG EAEASWNDPA 60 RRVVETRAAS FPRFTGDRRS AWRRMQAERS GGGGVEAAKL SDRSGGGEVA GIRWWLAGRL 120 EAEAGRAERP QGVLGESRSG FLRSPSMSEK KAAGGSPACD YCSESSAVIY CRADSARLCV 180 SCDRQVHEAN ALSRKHVRSQ ICDNCNAAAA SVRCAADGLV LCQDCDFDAH SAADEGAGWH 240 RRSAIEGFSG CPSAVEMASA WGFDLESKDC GDCGDCGDCG DRHLFAGLAV LDSVFADLYV 300 PCVRGGGGGC GKKPAAVLQL EELARRESSA AAALACQLSP GTPCRSSTGC GSGGEDCRRV 360 QQLPFTSLLM MAPFSCADLQ ENDRVVDEGD LIWDSGPRNH SVQV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MLSHRMEMRI STTSSRMVAG RRGNRGTVVG WRAGRRRQDK RRAVRATDAG EAEASWNDPA  60
RRVVETRAAS FPRFTGDRRS AWRRMQAERS GGGGVEAAKL SDRSGGGEVA GIRWWLAGRL  120
EAEAGRAERP QGVLGESRSG FLRSPSMSEK KAAGGSPACD YCSESSAVIY CRADSARLCV  180
SCDRQVHEAN ALSRKHVRSQ ICDNCNAAAA SVRCAADGLV LCQDCDFDAH SAADEGAGWH  240
RRSAIEGFSG CPSAVEMASA WGFDLESKDC GDCGDCGDCG DRHLFAGLAV LDSVFADLYV  300
PCVRGGGGGC GKKPAAVLQL EELARRESSA AAALACQLSP GTPCRSSTGC GSGGEDCRRV  360
QQLPFTSLLM MAPFSCADLQ ENDRVVDEGD LIWDSGPRNH SVQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	2e-39	CO-like family protein