PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA60225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | ARR-B | ||||||||
Protein Properties | Length: 561aa MW: 63854.3 Da PI: 5.723 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.4 | 4.3e-25 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G ek Pk+il+lm+v+gLt+e+v+SHLQkYRl PKA60225.1 202 KARVVWSVNLHQKFVNAVDQI-GFEKVGPKKILDLMNVPGLTRENVASHLQKYRL 255 68*******************.9*******************************8 PP | |||||||
2 | Myb_DNA-binding | 35.6 | 2.1e-11 | 204 | 254 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ +++++v+av q G + +k+I m+ g+t++++ s++qky+ PKA60225.1 204 RVVWSVNLHQKFVNAVDQIGFEkvGPKKILDLMNvPGLTRENVASHLQKYR 254 678***********************************************7 PP | |||||||
3 | Response_reg | 78 | 3.2e-26 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++l+++l+k y ev++ ++++al+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga PKA60225.1 21 VLVVDDDLTWLKILEKMLRKCSY-EVTTSCKARAALDLLRERKdkFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 115 89*********************.***************888778**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el + PKA60225.1 116 DYLLKPIRMKELKN 129 **********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence |
MQMENPSASS RAESFPCGLR VLVVDDDLTW LKILEKMLRK CSYEVTTSCK ARAALDLLRE 60 RKDKFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK 120 PIRMKELKNI WQHVYRKRIH EVKDLEGHDI SEDIHILRSG SEIVDDRFLV SASELSSLRK 180 RRDLETREFS DQELSDTATV KKARVVWSVN LHQKFVNAVD QIGFEKVGPK KILDLMNVPG 240 LTRENVASHL QKYRLYLSRL QKQNEAKAVG GGNRDHCKDR SGHHVGQRNL NTFIQNTGDN 300 NRYFYNDQKN QVQCMIQDVR EPELKTRVSL PVTDKNGAVK LGVHHSGLLI PFKGMLPKSD 360 EKLAYPSNST QVLQFTQYPK HDHEPFSLFE DYSHVAQYKP QIAFELPRNC PPSLVSIICN 420 KEKDKDGLFS LKSPMVDSEP SNASDLIFVQ LEHGVVNPEE LGGTCSNNNE PSSKEKNYEQ 480 THGLDLILPR NEANFVDLPE ELNVCSLQSL GWLENVGFDG ITDASTFAEF YGNGYDGMEF 540 NSEYFYDSLD YPFMDGCLFA Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-112 | ARR-B family protein |