PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA60216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 21997.2 Da PI: 4.6876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.9e-14 | 48 | 92 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ErrRRd++N+++ Lr+l+P+ +K+sK ++L A++YIk L PKA60216.1 48 NLKAERRRRDKLNQSIYALRSLVPNI-----TKMSKESTLADAIDYIKIL 92 5689*********************7.....7***************977 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MPRRPREFAF EADAMDLVDS MLEGLDDDAF TDSAAVEDDG DQKFKSKNLK AERRRRDKLN 60 QSIYALRSLV PNITKMSKES TLADAIDYIK ILEKEVVDLQ IELSGVQTEE GEKPGILSAT 120 ETTKPLQDAV PFKGMVQLCS LGKNKFHLKV TMEKRIGGFT KLLEAVSQLG LEVTEVTTVS 180 FSDIYQGALC LEVRSIF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 57 | ERRRRD |
2 | 53 | 58 | RRRRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 6e-26 | bHLH family protein |