PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA60162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 591aa MW: 66091.5 Da PI: 8.9663 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 251.3 | 3.7e-77 | 211 | 591 | 5 | 374 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 Ll++ a++ gdle+a +lLa ++++ p++dp+q l+a + L+ ++ + + ++ s ++ a++++++ P++k++ ++aN aIl PKA60162.1 211 LLNATWAIRRGDLEAAAHLLAAVKKTIEPSADPVQLLVATMFHSLRFLMQP------PPAAGLKFTDVCSRKQQVATQILHNKNPCFKLAVMAANMAIL 303 8889999***************************************99999......222333333334777888999********************* PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLa......sRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvakrl 186 + + ++Hi+Dfd+++G+Q +L++a+a +R+e+pps++iT+v +p+ + l+++g+rLa+ Ae+l++ ++f+v+ ++ PKA60162.1 304 MESYHLPKIHILDFDVGNGGQLSSLIHAMAmwhlnvERSEPPPSIKITAVYDPAFPfnssisdageTMRHLHSVGQRLAERAEKLNILLRFSVF-NCET 401 ****************************984333344779************875578889999999999**********************95.7789 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 ++l+ +L ++p Ea+ Vn+++ l rl+de+vs e++rd+vL++vk l+P vv +veq++d n++s+ +rf+ea ++y l++sl+ + r s+er+++ PKA60162.1 402 HELNRGNLGCEPVEAIFVNMAFFLSRLPDETVSPENPRDRVLRQVKALEPIVVAMVEQDLDVNGGSLTRRFMEAYQHYRPLLESLDFMAERGSSERSWL 500 *************************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374 + l+r+ nvva +g +r+er+e + W +r+++aGF+ +p+++ ++ ++l l+ v + gy+v+++ g++ gWk+r+Lv +S Wr PKA60162.1 501 DGC-LARKMANVVARSGPDRVERQELHAIWLDRMMRAGFERIPIRSMVVRLVQLRLNAVReNPGYTVNHNarGGWVGCGWKGRTLVIASTWR 591 976.********************************************************99*****9553256666**************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence |
MEPALRELMN YSSMDVCGSD GSCTDEADGL WIVPMDVDGE SQPPLTSPSL PPPPSENSRF 60 LTLHHQPSSG RYLPGRRITT IRDYPISPPA TLQMLGDVHH FVTPPPEFQT FQRGGSHIIF 120 PPRPLRPPPP PQALPVLQEY SECLALPLPL PLPLPLPQAY PAAPGPLPPL PPGPPRPQRW 180 RLPRRTVRRH QSCHPSASRA AQSLLEKKIK LLNATWAIRR GDLEAAAHLL AAVKKTIEPS 240 ADPVQLLVAT MFHSLRFLMQ PPPAAGLKFT DVCSRKQQVA TQILHNKNPC FKLAVMAANM 300 AILMESYHLP KIHILDFDVG NGGQLSSLIH AMAMWHLNVE RSEPPPSIKI TAVYDPAFPF 360 NSSISDAGET MRHLHSVGQR LAERAEKLNI LLRFSVFNCE THELNRGNLG CEPVEAIFVN 420 MAFFLSRLPD ETVSPENPRD RVLRQVKALE PIVVAMVEQD LDVNGGSLTR RFMEAYQHYR 480 PLLESLDFMA ERGSSERSWL DGCLARKMAN VVARSGPDRV ERQELHAIWL DRMMRAGFER 540 IPIRSMVVRL VQLRLNAVRE NPGYTVNHNA RGGWVGCGWK GRTLVIASTW R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 3e-67 | GRAS family protein |