PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60015.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 343aa MW: 37822.3 Da PI: 7.0115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	61	147	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....................................TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.................................kapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P+++ + + a+i+ A++++k+L PKA60015.1 61 QRMTHIAVERNRRRQMNEHLAVLRSLMPESYilkvfpfsppssssssslnnplmlspcssineaNLMRLQGDQASIVGGAIDFVKEL 147 79***************************7768888888888777777777777777777775544444456677777777777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSLEALVYDT ISATPQTFLL EAAASDVLSL PASVHPSPVA GKRKRRRRPR SCKNKEDAET 60 QRMTHIAVER NRRRQMNEHL AVLRSLMPES YILKVFPFSP PSSSSSSSLN NPLMLSPCSS 120 INEANLMRLQ GDQASIVGGA IDFVKELEQL LQSLEAQKWT IRQPPKVNGG QIPKMSTSGA 180 INETESGAMG LKDDDEVADL LPPFSQFFAY PQYNWCHAPP DYPPAAQESR APAVADIEVT 240 LVETHASLRI LSPRRPRQLI RLVAALQALR LSVLHLNVTT LEAMVLYTLS LKVEEGCSLT 300 TVDDIAAAVH RMLSLIESET SAMRQAYHEE HVAASAPRPP LPF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSLEALVYDT ISATPQTFLL EAAASDVLSL PASVHPSPVA GKRKRRRRPR SCKNKEDAET  60
QRMTHIAVER NRRRQMNEHL AVLRSLMPES YILKVFPFSP PSSSSSSSLN NPLMLSPCSS  120
INEANLMRLQ GDQASIVGGA IDFVKELEQL LQSLEAQKWT IRQPPKVNGG QIPKMSTSGA  180
INETESGAMG LKDDDEVADL LPPFSQFFAY PQYNWCHAPP DYPPAAQESR APAVADIEVT  240
LVETHASLRI LSPRRPRQLI RLVAALQALR LSVLHLNVTT LEAMVLYTLS LKVEEGCSLT  300
TVDDIAAAVH RMLSLIESET SAMRQAYHEE HVAASAPRPP LPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRKRRR
2	42	48	KRKRRRR
3	43	47	RKRRR
4	43	50	RKRRRRPR
5	62	73	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-59	bHLH family protein