PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59990.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 492aa MW: 52429.3 Da PI: 6.7497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.5e-13	316	361	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L PKA59990.1 316 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKDL 361 899*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MWLVSIHSMK VGLKIGCTVG LLGPICHVPV HRTGLRCEPG PLNLPLCSEL PLLIPPPSHQ 60 PSPSNLPIAQ PEKMEELISP SSSSSPPSFY SIQQPSSPAP SPPSTLQNRL QCFLNSRPEW 120 WAYAIFWSTS PDRSLLSFGD GHFRGKRTGG TGGGGSADGD DVEWFYVVSL TRSFAAGDAA 180 VPAQAYASLA PVWMAGEHAL QAYGCDRSRE ALLHGIQTLV AIPTAGGVLE LGSGDLILEN 240 WVLVQQAKVL LSAPEDACDH PLTKKDGSGG GLFAAGISSS VDSEHSDSEG GLVAERRRPR 300 KRGRKASNGG RETPANHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVSYIKD 360 LRSKIVELEA EVNKRSQKDI AAEQSPVNGG GGGGGGTPTS TTTTISSGSG AIDLEIKLLG 420 PDAIIRVQSE NLSHPPARLM AALRDLDLSV HHATVSTMRE VVLQDVVVRV PEGLQGDDEL 480 RSALLARFEG TS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MWLVSIHSMK VGLKIGCTVG LLGPICHVPV HRTGLRCEPG PLNLPLCSEL PLLIPPPSHQ  60
PSPSNLPIAQ PEKMEELISP SSSSSPPSFY SIQQPSSPAP SPPSTLQNRL QCFLNSRPEW  120
WAYAIFWSTS PDRSLLSFGD GHFRGKRTGG TGGGGSADGD DVEWFYVVSL TRSFAAGDAA  180
VPAQAYASLA PVWMAGEHAL QAYGCDRSRE ALLHGIQTLV AIPTAGGVLE LGSGDLILEN  240
WVLVQQAKVL LSAPEDACDH PLTKKDGSGG GLFAAGISSS VDSEHSDSEG GLVAERRRPR  300
KRGRKASNGG RETPANHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVSYIKD  360
LRSKIVELEA EVNKRSQKDI AAEQSPVNGG GGGGGGTPTS TTTTISSGSG AIDLEIKLLG  420
PDAIIRVQSE NLSHPPARLM AALRDLDLSV HHATVSTMRE VVLQDVVVRV PEGLQGDDEL  480
RSALLARFEG TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	RRRPRK
2	297	305	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-62	bHLH family protein