PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59944.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 707aa MW: 76509.4 Da PI: 6.4649

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	307	327	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PKA59944.1 307 PCPDFRK-GACRRGDMCEYAHG 327 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MFSGPDRIRL SSTLLFSSSS FQRNSSSAVE DMNHLTVETE DTFVSVLELA ANNDVDGFKR 60 IGDRDPSAID EVGEWYGRKK VIEQRTPLMV ASTYGSVDVL KFILSVSSVD VNRCCGPDMT 120 TALHCAASGG SLNAIEAVKI LLSAGADPNF SDVNGHRPAD VIIVHHKLSY VRAVLEELLG 180 SSGSPVGANH HANLRVSTST SNSNSPSLSS SPEEDGSPSS DSTSSPMTGK FQDLPQSVPE 240 KKEYPVDPSL PDIKNSIYAT DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCS RRVCFFAHTN 360 DELRPLYMST GSAVPSPRSS SSAAMEIAAM GFMPGSPSSV SAVLSPFTPP MSPSTNGISH 420 SSLNWSQPNV PALHLPGSNM QSSRLRSSLN ARDMLLDDYS MMQDFETQQL VNEICISRIG 480 SSVGNRSGRS NTLSPSNLDE IFSAEMPSSP RYNTEQGAIF SPSHKTAILN QFQQQQQSLL 540 SPINTGLLSP GMMSPRNIEP GSPISSRLAA FALREKQQQQ TLRSLSSRDL GVGASGLMGS 600 PVSSSFLKWG SPSGTLDWGV NTEELGRLKR SSSFELRAGG EEPDFSWVHS LVKESPPEKQ 660 GATKTSAGPS NLAPASSGAA AGSDNSHDHA AVLGAWLEQL QLDQMVV

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MFSGPDRIRL SSTLLFSSSS FQRNSSSAVE DMNHLTVETE DTFVSVLELA ANNDVDGFKR  60
IGDRDPSAID EVGEWYGRKK VIEQRTPLMV ASTYGSVDVL KFILSVSSVD VNRCCGPDMT  120
TALHCAASGG SLNAIEAVKI LLSAGADPNF SDVNGHRPAD VIIVHHKLSY VRAVLEELLG  180
SSGSPVGANH HANLRVSTST SNSNSPSLSS SPEEDGSPSS DSTSSPMTGK FQDLPQSVPE  240
KKEYPVDPSL PDIKNSIYAT DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCS RRVCFFAHTN  360
DELRPLYMST GSAVPSPRSS SSAAMEIAAM GFMPGSPSSV SAVLSPFTPP MSPSTNGISH  420
SSLNWSQPNV PALHLPGSNM QSSRLRSSLN ARDMLLDDYS MMQDFETQQL VNEICISRIG  480
SSVGNRSGRS NTLSPSNLDE IFSAEMPSSP RYNTEQGAIF SPSHKTAILN QFQQQQQSLL  540
SPINTGLLSP GMMSPRNIEP GSPISSRLAA FALREKQQQQ TLRSLSSRDL GVGASGLMGS  600
PVSSSFLKWG SPSGTLDWGV NTEELGRLKR SSSFELRAGG EEPDFSWVHS LVKESPPEKQ  660
GATKTSAGPS NLAPASSGAA AGSDNSHDHA AVLGAWLEQL QLDQMVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein