PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA59887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 446aa MW: 48781.6 Da PI: 6.377 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.2 | 4.9e-92 | 61 | 443 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lLl+cA a++++d++laq++L+ l+++a pdgdp+qRl+a f++AL r +rs+s + + ++ ++++ + al f++++P+++f++ +aN PKA59887.1 61 EQLLLHCAYAIEANDATLAQQILWVLHNIAPPDGDPNQRLTAAFVRALILRASRSGSPCGSLASTVAAQDAPLCLPAVALAGFVDLTPWHRFGFTAANA 159 79**********************************************************9999888887778888888888***************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl...vakrledlel 191 aI +a+++ +Hi+D+ ++ +Q p+L+++La+Rp+gp +R+T+++++ ++ +++ +g+rL +fA++ +v +ef+ + ++ l++l + PKA59887.1 160 AIADATDSFPVIHIVDLTTTYSMQIPTLIDSLACRPDGPRFIRLTVISPSPANsppptLETSFDDLGSRLVNFARSRNVGMEFRQVpasPSDGLDAL-V 257 ***********************************************99665578888889999*********************954323344444.8 PP GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++Lrv++ gEal++n++++lh++++e+v + +r ++Lk+++ l+P++vvvv+++a+ +s++ + r+ a++y + f+++++ lp++s++r+ PKA59887.1 258 RHLRVQQlvavGEALVINCHMMLHYIPEETVGNSTfsQRITFLKALRALEPTLVVVVDEDANFTSGDVVGRIRAAFNYLWIPFEAVDSFLPKDSQQRHR 356 89999989999******************998877779************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +E + ++++i+n++a+eg +r+er et ++W +++++ GF+ v ++e+aa+++k +l++++ g+ ++++++ lvl+Wk++ v++SaW PKA59887.1 357 YESA-IRWKIENLIAMEGIQRVERLETRGRWVQKMRRLGFRGVGFGEEAAAEVKGVLEEHS-AGWGMKKDEERLVLTWKGHDAVFASAW 443 ****.*******************************************************9.8999*********************** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 446 aa Download sequence |
MMQFTESAAA SPFSGSESPP AGLLLNLNGG PNSHAGDWPW PHYPASGKTS LGRYNSGAFM 60 EQLLLHCAYA IEANDATLAQ QILWVLHNIA PPDGDPNQRL TAAFVRALIL RASRSGSPCG 120 SLASTVAAQD APLCLPAVAL AGFVDLTPWH RFGFTAANAA IADATDSFPV IHIVDLTTTY 180 SMQIPTLIDS LACRPDGPRF IRLTVISPSP ANSPPPTLET SFDDLGSRLV NFARSRNVGM 240 EFRQVPASPS DGLDALVRHL RVQQLVAVGE ALVINCHMML HYIPEETVGN STFSQRITFL 300 KALRALEPTL VVVVDEDANF TSGDVVGRIR AAFNYLWIPF EAVDSFLPKD SQQRHRYESA 360 IRWKIENLIA MEGIQRVERL ETRGRWVQKM RRLGFRGVGF GEEAAAEVKG VLEEHSAGWG 420 MKKDEERLVL TWKGHDAVFA SAWVPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-143 | GRAS family protein |