PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA59517.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 527aa MW: 56198.5 Da PI: 4.6768 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 304.7 | 2.1e-93 | 117 | 500 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlsel....aspdg..dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPi 90 +v+lL+++Aea+s + ++ laq +Larl+el a++ g ++m Rlaa+f AL+ l + +++ e n + l a++l+ ++sP+ PKA59517.1 117 MVHLLMAVAEALSGSANSgdLAQVILARLKELvvtaAASGGaaTSMVRLAAHFSDALQGILDG--------AGGWASGEANcPGDLLEAFRLLEDMSPY 207 689*********98666656***********97764333334569****************99........222222222337899************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +kf+h+taNqaIleav+ge+r+Hi+D+d+++G+QWp+L+qaL sR+ ++p+l+iT+v + s+ +++etg+rLa fA+++g+pf+f + + PKA59517.1 208 VKFGHFTANQAILEAVAGERRLHIVDYDVMEGAQWPSLMQALMSRNdgLPTPRLKITAVTGSGRCrrSAATVQETGRRLAGFAASIGLPFSFCLCRLDY 306 **********************************************444578*******996655899**************************88889 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.........sFlerflealeyysalfdsleakl 275 e++++ + ++ +gEa++ n+v++ +l+++ +++ ++L +l +++v++ve+ea+ ++ F +rfl+ l+ ysa++dslea++ PKA59517.1 307 DETFRPATVKTVKGEAVVLNCVINPPHLPHHAAASVG---SFLAGATELGARLVTIVEEEASAAAAggggdggdeGFTARFLDELQRYSAILDSLEAGF 402 9999*************************77666666...9*******************776544466677777************************ PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 p ++++r++vE+++lg++i +v + ++r+e + ++ W+er+e+aGF+ v ls ++ +qa+lll ++ dgyrveee + lvl+Wk+ +L+s+S+W PKA59517.1 403 PMQDRARRVVEKVILGPRIAGAVGRAYRQRVEGEMAAKGWSERVEAAGFRRVGLSFFNLCQARLLLGLFN-DGYRVEEEaPNKLVLCWKSCRLFSTSVW 500 **********************************************************************.******77478999************** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence |
MQRHSQPKAQ RGKLDSIAMD CLMEQMISNM DADDMGWSGW SPELDWTAFA GAASFDDGDV 60 DIVQSMRCKD EDYGLDGAPP LHEWSTSASA SSAGTPTEDT TAVALDAGGE DDRGLRMVHL 120 LMAVAEALSG SANSGDLAQV ILARLKELVV TAAASGGAAT SMVRLAAHFS DALQGILDGA 180 GGWASGEANC PGDLLEAFRL LEDMSPYVKF GHFTANQAIL EAVAGERRLH IVDYDVMEGA 240 QWPSLMQALM SRNDGLPTPR LKITAVTGSG RCRRSAATVQ ETGRRLAGFA ASIGLPFSFC 300 LCRLDYDETF RPATVKTVKG EAVVLNCVIN PPHLPHHAAA SVGSFLAGAT ELGARLVTIV 360 EEEASAAAAG GGGDGGDEGF TARFLDELQR YSAILDSLEA GFPMQDRARR VVEKVILGPR 420 IAGAVGRAYR QRVEGEMAAK GWSERVEAAG FRRVGLSFFN LCQARLLLGL FNDGYRVEEE 480 APNKLVLCWK SCRLFSTSVW SAPAAAPPSA LVPAGFSFEE SELFNFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-104 | GRAS family protein |