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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PKA59452.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 301aa MW: 34290.5 Da PI: 9.2325 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 60.3 | 3.1e-19 | 77 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe n++++ +++++LA+ lgL+ rq+ vWFqNrRa++k
PKA59452.1 77 KKRRLNMEQVRALEKSFELgNNKLDPQRKTQLARALGLQPRQIAVWFQNRRARWK 131
667899************88**********************************9 PP
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| 2 | HD-ZIP_I/II | 125.8 | 1.9e-40 | 77 | 168 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrl+ eqv++LE+sFe + kL+p+rK++lar+Lglqprq+avWFqnrRAR+ktkqlE+dye Lkr++da+k++n+ L++++++L++e+
PKA59452.1 77 KKRRLNMEQVRALEKSFELGNnKLDPQRKTQLARALGLQPRQIAVWFQNRRARWKTKQLENDYELLKRQFDAIKAQNALLQSHNKQLQAEII 168
9*****************9887******************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 301 aa Download sequence |
MSWLPSSPPS SPKISIFRCR NSKMFEDQDP SNHQRQTTFM PLNPLLSSFD PHHFSRSASD 60 HEKNSNEYCS LPGENSKKRR LNMEQVRALE KSFELGNNKL DPQRKTQLAR ALGLQPRQIA 120 VWFQNRRARW KTKQLENDYE LLKRQFDAIK AQNALLQSHN KQLQAEIIDL RKETPADHDH 180 LMINLNKETE GSCSNRSTEN NSCSKNNINA VDNIQSAPNP IQYSIRQPPP AIISKLLQIR 240 SSSGQGYPQL PLISKMDQQP AAGGAVADEN LSNVLLCGMM EDQAAAFNWP WPDHHNSSKF 300 H |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 126 | 134 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 2e-57 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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