PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59436.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 798aa MW: 88971.4 Da PI: 7.51

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C++ F ++ n++rHir+H PKA59436.1 162 HKCDKCSREFCSSINYRRHIRVH 184 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MPTIKVRACA TSNIINKEPK IVKQDKEEQA KVDNLIQQAM VNEPFLSYSR ARDSPLHLIQ 60 LLHSFDQQGN GKPSKSPKGD NDVELKDNPL ELFNGNKETA NSFNNYGAHV KGIKNAYAPM 120 QNLKIPDAVV AFAQAAAKAS SDPEKLDISG WPFVSTSKTQ LHKCDKCSRE FCSSINYRRH 180 IRVHRRSLNV AKDSPKNKDL LAAFWDKLSV EETKELVSLK NVFMEEVSGP TVIKALSTWL 240 RWPGMFSSLS HVYIKAGLML LEVVQASSSV FPISSQELFR LLDDASEKTF LCAGTALSLQ 300 KYVFDGEVTK NALEMKNLIA CTSFLIEKEL VKAWLVDKDA EALRCQKLLF EEEEAAQKRK 360 AELLEKRRLK KLRQKEQKEK ETLNGMKDDF KAPSPNSATC TGSTEASSPR ASSEYCTSEA 420 SVNLDHQLLD STALCGAEGE LRLGLSLQNG NSEKNKIDQA QTRNYFSVPN AMTDGKNLRL 480 PLDSDSVEQD VAYQTQLEIH HQQPNHVRLR VCYKPTRNIH EAIIADQPSS VRSSVSTRYI 540 NTRNVKAISQ INGNKVWTIK SRPDDEEDGK NGRCMLDREL GDGPVVSHQT EVLIGSINVA 600 LGNDDGHHPY TILRPQFQEN STKLDSSLSS ASQTTVKQWR PVSCHGNGVV IQNDSRDAKV 660 DVPYCRSDEQ TISDESCVAS GLTSDTYFER CEGPMLFSSE VAKAFLTQRW KEAIARDDTV 720 VASSSEAEAF RVHVETKDAT ASPQLASFHA ENQPEWAKAT DPIPAVSLKL KLNRPKAEKA 780 SKFKYVPKQK VNAAEEYN

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MPTIKVRACA TSNIINKEPK IVKQDKEEQA KVDNLIQQAM VNEPFLSYSR ARDSPLHLIQ  60
LLHSFDQQGN GKPSKSPKGD NDVELKDNPL ELFNGNKETA NSFNNYGAHV KGIKNAYAPM  120
QNLKIPDAVV AFAQAAAKAS SDPEKLDISG WPFVSTSKTQ LHKCDKCSRE FCSSINYRRH  180
IRVHRRSLNV AKDSPKNKDL LAAFWDKLSV EETKELVSLK NVFMEEVSGP TVIKALSTWL  240
RWPGMFSSLS HVYIKAGLML LEVVQASSSV FPISSQELFR LLDDASEKTF LCAGTALSLQ  300
KYVFDGEVTK NALEMKNLIA CTSFLIEKEL VKAWLVDKDA EALRCQKLLF EEEEAAQKRK  360
AELLEKRRLK KLRQKEQKEK ETLNGMKDDF KAPSPNSATC TGSTEASSPR ASSEYCTSEA  420
SVNLDHQLLD STALCGAEGE LRLGLSLQNG NSEKNKIDQA QTRNYFSVPN AMTDGKNLRL  480
PLDSDSVEQD VAYQTQLEIH HQQPNHVRLR VCYKPTRNIH EAIIADQPSS VRSSVSTRYI  540
NTRNVKAISQ INGNKVWTIK SRPDDEEDGK NGRCMLDREL GDGPVVSHQT EVLIGSINVA  600
LGNDDGHHPY TILRPQFQEN STKLDSSLSS ASQTTVKQWR PVSCHGNGVV IQNDSRDAKV  660
DVPYCRSDEQ TISDESCVAS GLTSDTYFER CEGPMLFSSE VAKAFLTQRW KEAIARDDTV  720
VASSSEAEAF RVHVETKDAT ASPQLASFHA ENQPEWAKAT DPIPAVSLKL KLNRPKAEKA  780
SKFKYVPKQK VNAAEEYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	372	EKRRLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	5e-69	C2H2 family protein