PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59260.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 733aa MW: 80375.1 Da PI: 7.1696

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	69	97	1	27
--S---SGGGGTS..--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHgp 27 +kt+lC+ff+r+ C++Gd C++aHg+ PKA59260.1 69 WKTSLCSFFRRSRagVCRHGDACRYAHGE 97 8*******99999**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MIDMEVEAAD ETTSPANATA APSEPEEAER CDGSDLLVKR KREDNDEQNQ IDGSGIVGEG 60 IGPGRDYLWK TSLCSFFRRS RAGVCRHGDA CRYAHGEAEL RPRPGNTWDP TSDRAKKLLK 120 GNAGEVEKKK DAPVDLTILD KCLIGLPRKW ASDKLKSFLD ELASFSFCAI CPDFEISYNT 180 AKKKKGMTVG FVSFQNACQI ETAMEVLKEK SSNGKQIEVA DAVRRSQDKK HNVENSKNSI 240 SIEEHSCHAS SIVIQDDFAD TSIVEGIVSK TKNVRDVVTP LANMSYIDQL EYKKNSLIQT 300 LKRLTRNARK ACPDVVPLPE WVLKSREIGG LPCKLEGVLE SPLIEGYRNK CEFSVGYSLE 360 GEKTVGFMLG NFREGMTAVE QPDTCPNVSR ISCKYAKIFQ DFLLASEFPV WNRIDNSGFW 420 RQFTVREGRS SGQVAPNESA DVGIAEVMLI IQVCSLGFEE QMRNEFNRMA HALAHGAAIS 480 SPPLPLTAIV VQDHKGISNA ASADCPLITL QIPKVGGCSV PEMVVATEPR IHDYICNLRF 540 SISPTAFFQV NTFAAERLYN LSGEWAELSK DTLLFDICCG TGTIGLSLAH LVGMRPSGHQ 600 QAPTTPPLPL PPLLALWHAT AVLFLASCAS PSVLTTATPP PAGELARRRR RRLPAVGLLL 660 LFASIFRWLI PLARAGEPTI LVLMIRRVRL SQQFNASTSL SFPYTSVSST CNICSPLAVT 720 LYTGSFVCCG SLL

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MIDMEVEAAD ETTSPANATA APSEPEEAER CDGSDLLVKR KREDNDEQNQ IDGSGIVGEG  60
IGPGRDYLWK TSLCSFFRRS RAGVCRHGDA CRYAHGEAEL RPRPGNTWDP TSDRAKKLLK  120
GNAGEVEKKK DAPVDLTILD KCLIGLPRKW ASDKLKSFLD ELASFSFCAI CPDFEISYNT  180
AKKKKGMTVG FVSFQNACQI ETAMEVLKEK SSNGKQIEVA DAVRRSQDKK HNVENSKNSI  240
SIEEHSCHAS SIVIQDDFAD TSIVEGIVSK TKNVRDVVTP LANMSYIDQL EYKKNSLIQT  300
LKRLTRNARK ACPDVVPLPE WVLKSREIGG LPCKLEGVLE SPLIEGYRNK CEFSVGYSLE  360
GEKTVGFMLG NFREGMTAVE QPDTCPNVSR ISCKYAKIFQ DFLLASEFPV WNRIDNSGFW  420
RQFTVREGRS SGQVAPNESA DVGIAEVMLI IQVCSLGFEE QMRNEFNRMA HALAHGAAIS  480
SPPLPLTAIV VQDHKGISNA ASADCPLITL QIPKVGGCSV PEMVVATEPR IHDYICNLRF  540
SISPTAFFQV NTFAAERLYN LSGEWAELSK DTLLFDICCG TGTIGLSLAH LVGMRPSGHQ  600
QAPTTPPLPL PPLLALWHAT AVLFLASCAS PSVLTTATPP PAGELARRRR RRLPAVGLLL  660
LFASIFRWLI PLARAGEPTI LVLMIRRVRL SQQFNASTSL SFPYTSVSST CNICSPLAVT  720
LYTGSFVCCG SLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	210	KKKKGMTVGFVSFQNACQIETAMEVLKEK
2	647	652	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	1e-180	C3H family protein