PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59084.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 451aa MW: 51324.6 Da PI: 6.4534

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.6e-23	111	210	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k lt sd++++g +++ +++a+e+ +++++ +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF + +++el+v PKA59084.1 111 FCKSLTASDTSTHGGFSVLRRHANEClppldMSQPTPNQELNAKDLHGFEWRFKHIYRGQPRRHLLTSGWSTFVTSKRLVAGDAFVFI--RGENGELRV 207 99***************************77788888***********************************************..448999999 PP EEE CS B3 95 kvf 97 ++ PKA59084.1 208 GLK 210 876 PP
2	Auxin_resp	92.5	7.2e-31	237	316	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++ ++ F+v Y+Pr+ ++F+v v+k++++++++v++G Rfkm+fe+ed +e+r++Gtvv+v+dl++ +W++SkWr+Lk PKA59084.1 237 ASHALTAQTFFTVSYKPRT--TQFIVGVNKYLESVNNPVTPGLRFKMNFEGEDIHEKRYTGTVVDVEDLSS-QWEGSKWRQLK 316 6899************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MGSDDLYEEL WRACAGPLVE IPQVGERVYY FPQGHMEQLE ASTNQELNQQ IPLFNLPFKI 60 LCLVLNVELK AEPETDEVYA QIALLPEPDQ TELKTLDPCL PQPKRSVVHS FCKSLTASDT 120 STHGGFSVLR RHANECLPPL DMSQPTPNQE LNAKDLHGFE WRFKHIYRGQ PRRHLLTSGW 180 STFVTSKRLV AGDAFVFIRG ENGELRVGLK RLVRPKSTIP SSVISSHSMH LGVLATASHA 240 LTAQTFFTVS YKPRTTQFIV GVNKYLESVN NPVTPGLRFK MNFEGEDIHE KRYTGTVVDV 300 EDLSSQWEGS KWRQLKVQWD EPANFQRPDK VSPWEIEPKV SNLKKAAQMG SSRSRIKVHM 360 HGVAIGRALD LMNLGGYDEL ISELQKMFEI GGELGQRDKW EVVFTDDEGD TMLVGDYPWQ 420 EFCEMVMKIY IYPREEVKKL KPGFKLADQP C

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MGSDDLYEEL WRACAGPLVE IPQVGERVYY FPQGHMEQLE ASTNQELNQQ IPLFNLPFKI  60
LCLVLNVELK AEPETDEVYA QIALLPEPDQ TELKTLDPCL PQPKRSVVHS FCKSLTASDT  120
STHGGFSVLR RHANECLPPL DMSQPTPNQE LNAKDLHGFE WRFKHIYRGQ PRRHLLTSGW  180
STFVTSKRLV AGDAFVFIRG ENGELRVGLK RLVRPKSTIP SSVISSHSMH LGVLATASHA  240
LTAQTFFTVS YKPRTTQFIV GVNKYLESVN NPVTPGLRFK MNFEGEDIHE KRYTGTVVDV  300
EDLSSQWEGS KWRQLKVQWD EPANFQRPDK VSPWEIEPKV SNLKKAAQMG SSRSRIKVHM  360
HGVAIGRALD LMNLGGYDEL ISELQKMFEI GGELGQRDKW EVVFTDDEGD TMLVGDYPWQ  420
EFCEMVMKIY IYPREEVKKL KPGFKLADQP C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46530.1	1e-168	ARF family protein