PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58859.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 308aa    MW: 33793 Da    PI: 7.062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.3e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++++++G g+W++ ++  g++R++k+c++rw +yl
       PKA58859.1 14 KGPWTPEEDEKLVEYIQKHGHGSWRLLPKSAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+ l+++++  lG++ W++Ia++++ gRt++++k++w+++l
       PKA58859.1  67 RGKFSDEEEHLIIHYHSILGNK-WSSIAARLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGRSPCCDVD GVKKGPWTPE EDEKLVEYIQ KHGHGSWRLL PKSAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SDEEEHLIIH YHSILGNKWS SIAARLPGRT DNEIKNYWNT HLKKKLLLTG  120
VDPVTHHRRT DFELLAGLPS LAGSWDQALR LQAGVANLAK IQILQGFLQA LASSSSSSNS  180
TTPPSYADMM ISNLLGSPFS SLRSSPAPVP QPLPPPADLL LLSHPISSYG SSPQEPLNYL  240
QAFNPAIPSL ISTSPENTSA EDQKQYNFSS NEASVAANSS SSTPFEALDS LNLSHPDAGD  300
LSWKDILE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-84MYB family protein