PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA58623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23205.8 Da PI: 8.7602 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.6e-15 | 44 | 96 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+++hn+ Er RR+++Ns f+ Lr+llP++ ++ kKls +++ + +YI +Lq PKA58623.1 44 RKKNHNAYERDRRKKLNSLFSSLRSLLPES--GHRKKLSIPSTVNQMLKYIPELQ 96 799**************************8..57777***************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MQDLLCLDEV SFSLPPSPAP PAELDDLSWP SVLSPISGHC RSPRKKNHNA YERDRRKKLN 60 SLFSSLRSLL PESGHRKKLS IPSTVNQMLK YIPELQQHIE QLKKKKEELQ IEISQGSLQE 120 HLAHRNNDCA LPIVSAICLS KKEIMIQLCF TKDNNKAGSR GSFSRVLMAL EEEGLQLMNA 180 SSFVANDRRI FHFLHLEVIN NIIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 58 | RKKNHNAYERDRRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-16 | bHLH family protein |