PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58612.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 431aa    MW: 47885.8 Da    PI: 6.3531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.38.8e-126484261374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 
                 l++lLl+cA++v++gdl +a+alL+ +s l+s dgd++qR+a+yf  ALa+rl+rs++++y+al ps +      +  + a++lf +++P+l++s+l+ 
  PKA58612.1  48 LIHLLLNCANHVAAGDLYQANALLEPISFLSSGDGDTVQRIASYFSTALARRLLRSWPGVYRALDPSLAGAGAdGAGGAYARRLFLDLCPFLRLSFLIS 146
                 689*************************************************************7776654444999999******************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaI+e++ege+ +H +D++ s +++W++LlqaLa Rpegpp+lRiT+v++    +++ l +t++ L++ Ae+l++pf+fn+ +++ l+ l++e+Lrvk
  PKA58612.1 147 NQAIMESMEGEKVIHLVDLGGSDPTHWLSLLQALAGRPEGPPHLRITAVSE----QSDLLAQTASLLSNEAERLDIPFQFNA-IVSPLDVLDVESLRVK 240
                 ***************************************************....99*************************.79************** PP

        GRAS 198 pgEalaVnlvlqlhrll...........desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                 +gEalaV ++l+lh+ll               +++s  + +++L+ +++lsPk++ v+eqe++hn+ ++ erf+eal++ys+lfd+le+++pr+s +r+
  PKA58612.1 241 TGEALAVVSALHLHTLLacgvpldkdsrT---ESPSpaKMERLLSSIWGLSPKIFLVTEQESNHNGLTLNERFMEALNFYSTLFDCLESTAPRHSPDRA 336
                 *****************999999885532...2222346899********************************************************* PP

        GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vE++ +g+ei+n+++ceg er+erhe+le+W +rle+aGF+  p++++ + qa+++l  ++ dg rv+ee+g+l+l+W+dr+L+svSaWr
  PKA58612.1 337 RVEKM-FGEEIKNIISCEGPERKERHERLERWTRRLEMAGFRRRPMTYYGMLQARRMLLAFGCDGCRVKEENGCLLLCWQDRALYSVSAWR 426
                 *****.************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MAGIADEVSS PTTSSPLRSF TSMSPTALGS PCAPWLRELN SDERGLFLIH LLLNCANHVA  60
AGDLYQANAL LEPISFLSSG DGDTVQRIAS YFSTALARRL LRSWPGVYRA LDPSLAGAGA  120
DGAGGAYARR LFLDLCPFLR LSFLISNQAI MESMEGEKVI HLVDLGGSDP THWLSLLQAL  180
AGRPEGPPHL RITAVSEQSD LLAQTASLLS NEAERLDIPF QFNAIVSPLD VLDVESLRVK  240
TGEALAVVSA LHLHTLLACG VPLDKDSRTE SPSPAKMERL LSSIWGLSPK IFLVTEQESN  300
HNGLTLNERF MEALNFYSTL FDCLESTAPR HSPDRARVEK MFGEEIKNII SCEGPERKER  360
HERLERWTRR LEMAGFRRRP MTYYGMLQAR RMLLAFGCDG CRVKEENGCL LLCWQDRALY  420
SVSAWRCRRY D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-170GRAS family protein