PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA58461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C3H | ||||||||
Protein Properties | Length: 399aa MW: 43142.7 Da PI: 8.5792 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.4 | 2e-12 | 41 | 67 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG C yG+rC+F+H++ PKA58461.1 41 PGVPDCAYYMRTGACGYGERCRFNHPR 67 5789*********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ PKA58461.1 86 QPVCEYYMKTGTCKFGSSCKYHHPR 110 689********************96 PP | |||||||
3 | zf-CCCH | 40.5 | 4.5e-13 | 130 | 156 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G++CkF H++ PKA58461.1 130 PGERECSYYMKTGQCKFGPTCKFDHPQ 156 5789*********************97 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 274 | 300 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++Ck++H++ PKA58461.1 274 PGQPECQFYMRTGDCKFGASCKYHHPR 300 5789*********************96 PP | |||||||
5 | zf-CCCH | 32.2 | 1.9e-10 | 323 | 345 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C +++r G Ck+G++CkF H+ PKA58461.1 323 QICAYYSRHGVCKFGPTCKFDHP 345 58********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence |
MDAYGQVPRQ DLDTGLEESM WRLGLAGGSG GGADFSYPER PGVPDCAYYM RTGACGYGER 60 CRFNHPRDRG IAQFAGAGEY PERAGQPVCE YYMKTGTCKF GSSCKYHHPR HEGGSARPVL 120 LNYYGYPLRP GERECSYYMK TGQCKFGPTC KFDHPQPANA SMPSSASIYF SAVQPSSISS 180 SQQYPSSGSW QVGRPSAMLS GAYVPSSYGP MVLSPGVVPV PGWGAYPSPL SPGAQQTAQV 240 GSLYGPPTQL SPSAPAYARP SIGSQRESTL PERPGQPECQ FYMRTGDCKF GASCKYHHPR 300 DWSMPMTNCM LSRLGLPLRP GAQICAYYSR HGVCKFGPTC KFDHPVRTLS YGPLPPPVEM 360 PAAPYPIEIS LPTIIASSSS TQISAASSSR TKREMPSST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-127 | C3H family protein |