PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58393.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 291aa MW: 31169.6 Da PI: 4.7024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.7	3.9e-13	221	245	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G+C+yG+rC+FaHg PKA58393.1 221 KTELCNKWGEMGWCPYGERCQFAHG 245 8***********************8 PP
2	zf-CCCH	17.8	6.1e-06	258	282	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykt lCr +tG C+yG rC+F H PKA58393.1 258 YKTQLCRMLGATGGCPYGHRCHFRH 282 9**********************77 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MADESTPPAM VNLAAGPSSS CSSFIGDSGT TTASATTSDG TSTDLFEMQR SLIHLELQTL 60 IDRYDDSFRQ LQRTVSDLEA LRQENALLVS ENLELSSLVE VQEKSESASS SAAVYSANPQ 120 AEIGNTPISC GEADHGPPAG EENAPTCRSV LPKSISIRSS GFLAARRPPL REGDAGFAGA 180 CRPLRLRLPA PVALQGEGDG EGEGDGEGEV EVDAYNQGTA KTELCNKWGE MGWCPYGERC 240 QFAHGIQELR PVIRHPRYKT QLCRMLGATG GCPYGHRCHF RHAALPVSDD R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	2e-39	C3H family protein