PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58356.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARF
Protein Properties Length: 468aa    MW: 51180.3 Da    PI: 9.3667
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21110211199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g l++p   +++        ++++++  +++++d  grsW+++liyr++++r+++t+GW+ F ++++L +gD++vF   ++  +el
  PKA58356.1 110 FSKTLTKSDANSGGALTVPIAGVRSVfpsldytKMPPAQ--DVSMTDVGGRSWKFRLIYRGNPRRHLITTGWRTFSDSKKLVSGDTLVFI--RSPAGEL 204
                 88****************************998777777..7************************************************..55999** PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PKA58356.1 205 FVGIRRA 211
                 *****97 PP
2Auxin_resp60.47.5e-21228312283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                 +++a+++ +Fev+Y+P  + +eF+v+ e+ve+a++v++ +G R+kma+ +++++  +     Gtv++    ++ rWp+S Wr+Lk
  PKA58356.1 228 IREANMGRPFEVLYCPNGGLPEFMVEKERVEAAMEVPWGAGLRVKMAVVEDEAAGMKKklfHGTVSAAVVPENGRWPRSIWRLLK 312
                 6789999****************************************98887753332235**********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MAQLQILRPV DVDVWIACAG RSNLLPAVGG QFYYFPEGHA EHAASLPDFS SFRSLQPFYL  60
CQITEVCLLA HPTSDEIYAK ISLDHHRFHP AGSSLRRPPS PAKLSRVISF SKTLTKSDAN  120
SGGALTVPIA GVRSVFPSLD YTKMPPAQDV SMTDVGGRSW KFRLIYRGNP RRHLITTGWR  180
TFSDSKKLVS GDTLVFIRSP AGELFVGIRR ARRTTMGRVS SQSVVEAIRE ANMGRPFEVL  240
YCPNGGLPEF MVEKERVEAA MEVPWGAGLR VKMAVVEDEA AGMKKKLFHG TVSAAVVPEN  300
GRWPRSIWRL LKVNWDKQGG EAMPDDEAAS PWQVDLESSL PAFYARKRPR LLPHHVGGEG  360
SLGFFFPPAT AGFGGADEIR RRSSPCLSLF DVHEPSDVRR ASSIFLNGAD DAHHEDSAAA  420
ASRSEVSTQS VGGSSGGRRV LKLFGQIILS ERSAGEAELP GAGCRFFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.16e-79ARF family protein