PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58019.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 428aa MW: 46002.9 Da PI: 7.7281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	259	304	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L PKA58019.1 259 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYIKEL 304 799*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEELISPSSS CSPPAAAAVQ PFYSIQPFPV PPSPTTMQNR LQCLLHARQE WWTYAIFWRA 60 SPDHRHLSFG DGHFRGNREI ERKRSAVLSV GDGDEAEWFY AVSLTRSFAV GEAASVPARA 120 YASLAPIWLT GADALQTFGC DRSAEAHLHG VETLVCIPTA GGVLELGSSD QTGENWILIQ 180 QAKSLLSIPH SDTVLLSASP GSSQLKMETT SASGGIFTGL SSSVDSEHSD SSAGGLAAGR 240 RRSKKRSRKA GIGRENPVNH VEAERQRREK LNHRFYALRS VVPNVSRMDK ASLLSDAVSY 300 IKELREKVEE LENIQTKRAR KKEVIVGGGG GGGGGGGAPG VVVSGERATM EVEVNLVGSN 360 AIIRVQSESL NHPPAKLMAA LRDLDVIVHH ATVSGLKELV LQNVVVRVPE GLQGEESLRS 420 ALVARLEN

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEELISPSSS CSPPAAAAVQ PFYSIQPFPV PPSPTTMQNR LQCLLHARQE WWTYAIFWRA  60
SPDHRHLSFG DGHFRGNREI ERKRSAVLSV GDGDEAEWFY AVSLTRSFAV GEAASVPARA  120
YASLAPIWLT GADALQTFGC DRSAEAHLHG VETLVCIPTA GGVLELGSSD QTGENWILIQ  180
QAKSLLSIPH SDTVLLSASP GSSQLKMETT SASGGIFTGL SSSVDSEHSD SSAGGLAAGR  240
RRSKKRSRKA GIGRENPVNH VEAERQRREK LNHRFYALRS VVPNVSRMDK ASLLSDAVSY  300
IKELREKVEE LENIQTKRAR KKEVIVGGGG GGGGGGGAPG VVVSGERATM EVEVNLVGSN  360
AIIRVQSESL NHPPAKLMAA LRDLDVIVHH ATVSGLKELV LQNVVVRVPE GLQGEESLRS  420
ALVARLEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	247	RRRSKKRS
2	241	248	RRRSKKRS
3	241	247	RRSKKRS
4	241	249	RRSKKRSRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-64	bHLH family protein