PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA57355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 470aa MW: 52990.4 Da PI: 9.764 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 253.7 | 7.1e-78 | 72 | 467 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++l+l cA v+ +dl+ a + L +l +as +g+p++R+aayf+ +L arl+ +s l +++++++++ +eelaa+ f+ +sP+++f+h+taN PKA57355.1 72 LIRLILLCAASVHRRDLRTAAESLMNLYRRASLTGEPIERVAAYFADGLFARLLLPSSPLQATIAANPSP----EEELAAFAGFYYASPCYQFAHFTAN 166 5789999************************************************999999999888887....7999999****************** PP GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl 189 qaI++a e++ +H++D+d+s+G+QWp+L+q+L++R+ ++p sl iTg+g+ s +el++t+ rL++fA + +++f+f+ + + ++ PKA57355.1 167 QAIMDAYEEAesfngGNLHVVDLDVSHGFQWPSLMQSLSDRAtttNKPISLSITGFGR----SLHELRQTAARLRSFAGGCsNLSFDFQGKIIRPSHSG 261 ********9966666778***********************99867777*********....9***************87549*******999999999 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...................sFlerflealeyysalfd 269 l Lr k++ +++Vn + ++l+++++++s +L+++++++P++v++ve+e + ++ Fl rf+e+l+y++a+fd PKA57355.1 262 PLAVLREKKNATVVVNNLVFYLQTLKSTAEISS----TLRAIREVNPNLVILVEREDRRPEPeehltenrldgeeegggggGFLPRFMESLQYFAAMFD 356 9**************988777777778888887....*******************777444467888999**************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve............eesg 356 sl+ lpres er+ +E+ lgrei++++ + + r++ ++++e+ F+ v++s +a++qakll+++ + +g +e e++g PKA57355.1 357 SLNGCLPRESLERVRIEKNHLGREIREALLMGDRP-GRRTR-----EMMMERRWFEGVRMSWRAVSQAKLLVKMKS-QGSAMEhlrggarfsvweEDDG 448 ****************************9998887.22222.....57999999***************9999887.6666664555555555556677 PP GRAS 357 slv.lgWkdrpLvsvSaWr 374 ++ lgW++r+L++v+aWr PKA57355.1 449 RALsLGWQGRRLLTVTAWR 467 7767**************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence |
MQQTEVSGDL PSLSLSLGGR GTSSYHADPS LKHRKRKREQ YDRRSRAKHL LRARNCMMRR 60 CSNEFDGKGH LLIRLILLCA ASVHRRDLRT AAESLMNLYR RASLTGEPIE RVAAYFADGL 120 FARLLLPSSP LQATIAANPS PEEELAAFAG FYYASPCYQF AHFTANQAIM DAYEEAESFN 180 GGNLHVVDLD VSHGFQWPSL MQSLSDRATT TNKPISLSIT GFGRSLHELR QTAARLRSFA 240 GGCSNLSFDF QGKIIRPSHS GPLAVLREKK NATVVVNNLV FYLQTLKSTA EISSTLRAIR 300 EVNPNLVILV EREDRRPEPE EHLTENRLDG EEEGGGGGGF LPRFMESLQY FAAMFDSLNG 360 CLPRESLERV RIEKNHLGRE IREALLMGDR PGRRTREMMM ERRWFEGVRM SWRAVSQAKL 420 LVKMKSQGSA MEHLRGGARF SVWEEDDGRA LSLGWQGRRL LTVTAWRCSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 2e-40 | GRAS family protein |