PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56946.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 917aa MW: 104045 Da PI: 7.6525

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.7e-23	97	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YAk+ GFsvrk + ++ ++g+i +r + Cs eg+r++++++ ++r++r+ rt+C a+++ k ++dg w+v+k+ +eHnH+l PKA56946.1 97 VYNTYAKRKGFSVRKGHLGRR-KDGTIRDRVYLCSYEGTRQKHSTH--NTRKPRPILRTNCMARIEYKVNRDGIWVVNKIIKEHNHPLI 182 6**************9997.8888***********99887..9************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MDKVPEPPLP PVMESSSSFS NDGSVETAED SIGEKEDYDV RDNAAGEDAV LDSLQAATRF 60 NSSNVNPADP STNSASSTQL EPEVGMVFYS EEQAYAVYNT YAKRKGFSVR KGHLGRRKDG 120 TIRDRVYLCS YEGTRQKHST HNTRKPRPIL RTNCMARIEY KVNRDGIWVV NKIIKEHNHP 180 LIRPTKAHLL RSHRRLLLAA QDGQQVDQPD NSAVKSAQVV STEQVSENES PVDFFLRVQS 240 SHLHTNRMRE LDKGEMQMLL DFLRAKQLGD PSFFYAVQLD DKEQVTNVFW ADARSILDYS 300 YFGDVVLFDT TYRMNVNDIP IAQFIGVNHH KQLVLFGSAL LLDETTESFA WLFRTFMAAM 360 SGRQPKTILT DQCAAIARSA MMTFSESSHR LCLWHILQNT AKNLSHLYSN DSSFLKDFKS 420 CLYETGSDED LNAGWLTLLN KYDLAGNSYL EDLFSAREKW AFVCNGNTFC ASMISMEWCD 480 ILKKHFRKYF NRKLPLSKFI EQYPKSLLQY RDKELGEDFR SKQSKPVLLV DMPMLNEAAE 540 SYTRLIFADF EAEFKGQLSC LCELVRTDET MYIFRISLPE NRCYGLVEFN TSTYSVTCSC 600 KKFESVGILC MHVLKVLINN NILHLPPQYI LKRWTKYAND GALTDKFHPM NDNNGQESQM 660 SPYSRVCYKA ITVCLKNACS KVALNKLDHD VDKFVVEVEK LLHNAPVNKQ TEEQNDLEGI 720 HQDISRSRKK RRRRKSQSKC VVDAKRKGKD QSNSDSGHTF GSLHPSQRQT NDTSMQAVVD 780 ESAHVPTYFR DATAYCNALS TQPVSISTCA SFPPETLMSQ QEPYTPSQGI FDHPIASQGA 840 TSPNLSWCAA RGRGSISVPM PLMQGQNSSY VSWVIPTHNL PNVGILSRHL DQPLHGTVTT 900 QQQALTRKLN FDINKGN

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MDKVPEPPLP PVMESSSSFS NDGSVETAED SIGEKEDYDV RDNAAGEDAV LDSLQAATRF  60
NSSNVNPADP STNSASSTQL EPEVGMVFYS EEQAYAVYNT YAKRKGFSVR KGHLGRRKDG  120
TIRDRVYLCS YEGTRQKHST HNTRKPRPIL RTNCMARIEY KVNRDGIWVV NKIIKEHNHP  180
LIRPTKAHLL RSHRRLLLAA QDGQQVDQPD NSAVKSAQVV STEQVSENES PVDFFLRVQS  240
SHLHTNRMRE LDKGEMQMLL DFLRAKQLGD PSFFYAVQLD DKEQVTNVFW ADARSILDYS  300
YFGDVVLFDT TYRMNVNDIP IAQFIGVNHH KQLVLFGSAL LLDETTESFA WLFRTFMAAM  360
SGRQPKTILT DQCAAIARSA MMTFSESSHR LCLWHILQNT AKNLSHLYSN DSSFLKDFKS  420
CLYETGSDED LNAGWLTLLN KYDLAGNSYL EDLFSAREKW AFVCNGNTFC ASMISMEWCD  480
ILKKHFRKYF NRKLPLSKFI EQYPKSLLQY RDKELGEDFR SKQSKPVLLV DMPMLNEAAE  540
SYTRLIFADF EAEFKGQLSC LCELVRTDET MYIFRISLPE NRCYGLVEFN TSTYSVTCSC  600
KKFESVGILC MHVLKVLINN NILHLPPQYI LKRWTKYAND GALTDKFHPM NDNNGQESQM  660
SPYSRVCYKA ITVCLKNACS KVALNKLDHD VDKFVVEVEK LLHNAPVNKQ TEEQNDLEGI  720
HQDISRSRKK RRRRKSQSKC VVDAKRKGKD QSNSDSGHTF GSLHPSQRQT NDTSMQAVVD  780
ESAHVPTYFR DATAYCNALS TQPVSISTCA SFPPETLMSQ QEPYTPSQGI FDHPIASQGA  840
TSPNLSWCAA RGRGSISVPM PLMQGQNSSY VSWVIPTHNL PNVGILSRHL DQPLHGTVTT  900
QQQALTRKLN FDINKGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	734	RKKRRRR
2	728	747	RKKRRRRKSQSKCVVDAKRK
3	729	734	KKRRRR
4	729	735	RKKRRRR
5	729	748	RKKRRRRKSQSKCVVDAKRK
6	730	735	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1 family protein