PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56934.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 446aa MW: 49221.2 Da PI: 7.2632

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.6	3e-22	82	186	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++L+ ++ +++e++ +g+ ++k++W++vs++m+e+gf +sp+qC++k+++lnkryk+++e +k+ +++++++ + PKA56934.1 82 KWTDHMVRLLVWVVHSVGEEVAAGCgetaeasgkarkaaegmqQRKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRLTELLGKGtACRAVENPA 180 7*******************998888889999999999999******************************************559***** PP trihelix 81 yfdqle 86 +d+++ PKA56934.1 181 ILDSMD 186 999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MEGGSGLPGG MLSRTVGPGV AGIEMPDAAA YGYPAGGGRG KQQQSQGTAE DASAGEYPDA 60 GAANAAKRVS QPQSPSPWHR MKWTDHMVRL LVWVVHSVGE EVAAGCGETA EASGKARKAA 120 EGMQQRKGKW KSVSRAMMEK GFFVSPQQCE DKFNDLNKRY KRLTELLGKG TACRAVENPA 180 ILDSMDHLPT KAKDEARKLL CSKHLFFREM CAYHNISAAG VSTTAAAASS SCTAPFPPDN 240 HHGGGAALST VEELVQEEAS GAVRNHYQEE GEEGDDDDEV SSGDDFSDDR KDVKSLETFP 300 ASRQKRKAPL SPPAISPLSL SLSSPSWSTS APAQQLREEF VGLQGDPQQK IQWLRMKAAE 360 QEERQVSYHH RWLQLERRRF KWLRFSGSKE REMEKTRLRN ERLRLENERM LLLLQHKEIR 420 LLELSSNGAG DSSLQIMPEN LHHHHL

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MEGGSGLPGG MLSRTVGPGV AGIEMPDAAA YGYPAGGGRG KQQQSQGTAE DASAGEYPDA  60
GAANAAKRVS QPQSPSPWHR MKWTDHMVRL LVWVVHSVGE EVAAGCGETA EASGKARKAA  120
EGMQQRKGKW KSVSRAMMEK GFFVSPQQCE DKFNDLNKRY KRLTELLGKG TACRAVENPA  180
ILDSMDHLPT KAKDEARKLL CSKHLFFREM CAYHNISAAG VSTTAAAASS SCTAPFPPDN  240
HHGGGAALST VEELVQEEAS GAVRNHYQEE GEEGDDDDEV SSGDDFSDDR KDVKSLETFP  300
ASRQKRKAPL SPPAISPLSL SLSSPSWSTS APAQQLREEF VGLQGDPQQK IQWLRMKAAE  360
QEERQVSYHH RWLQLERRRF KWLRFSGSKE REMEKTRLRN ERLRLENERM LLLLQHKEIR  420
LLELSSNGAG DSSLQIMPEN LHHHHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-53	Trihelix family protein