PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA56834.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 444aa    MW: 49057.8 Da    PI: 8.7803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA56834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2661.3e-81664411374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv+lLl  A av+ +d+++a + L +l  +a  +gdp++R+aayf+ +L arl+      +++ +p ++     +ee++a+++++ +sP+++f+h+taN
  PKA56834.1  66 LVRLLLVSAVAVDRRDHRAAAQSLLELYRTACLSGDPIHRVAAYFADGLFARLSP-----AHSPAPGPS----PEEEFSAFTALYSASPFYQFAHFTAN 155
                 5789999***********************************************9.....444444444....578999******************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl 189
                 qaI+ea+e e       +H++Dfd+++G+QWp+L+q+L++++   ++p +lRiTg+g+    s  el+et+ rL++fA+ + +++fef+     r +++
  PKA56834.1 156 QAIVEAFEAEesfnaGVLHVVDFDVTYGFQWPSLIQSLSDKAssnNKPITLRITGFGR----SPAELQETATRLRSFAAGFrNLSFEFKG--KLRGAKF 248
                 ********9966665667*********************9997745566*********....9**************998748******9..67999** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpreseeri 283
                 ++ ++      +++Vnlv+ l++l  ++++++    ++L + ++l+P +v ++e+ea  n +      +l rf+++l+y++a+fdsl+  lp+es+er 
  PKA56834.1 249 DPTQITAGGTATVVVNLVFFLQKLR-SHAEVR----STLAAARELNPSLVMLIEREAGGNPAgfagsGYLGRFMDCLHYFAAMFDSLNDCLPAESSERL 342
                 *****9999**************97.445555....5*******************999877444447789**************************** PP

        GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr...kvk.sd..g.....yrveee.sgslv.lgWkdrpLvs 369
                  +E+  lg+ei+  v+++  e ++r++     + ++e+ GF+ v+ls++ ++qaklll+   +++ +d  g     +rv e+ +g ++ lgW++r+L++
  PKA56834.1 343 RIEKNHLGWEIMRSVTMADGEEIMRTK-----KGAMERNGFEGVRLSSRSVSQAKLLLKiksHCSaMDehGgggggFRVCERdDGRAMsLGWQERRLIT 436
                 ******************999777777.....789**********************97333222222121233458887553555656********** PP

        GRAS 370 vSaWr 374
                 ++aWr
  PKA56834.1 437 ATAWR 441
                 ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MQLEEGEDLL SLSLSVSSSR KRKRSIDQKP FDGSHILLLL QARDRMIKLD GRRQRYQEGD  60
GRGLHLVRLL LVSAVAVDRR DHRAAAQSLL ELYRTACLSG DPIHRVAAYF ADGLFARLSP  120
AHSPAPGPSP EEEFSAFTAL YSASPFYQFA HFTANQAIVE AFEAEESFNA GVLHVVDFDV  180
TYGFQWPSLI QSLSDKASSN NKPITLRITG FGRSPAELQE TATRLRSFAA GFRNLSFEFK  240
GKLRGAKFDP TQITAGGTAT VVVNLVFFLQ KLRSHAEVRS TLAAARELNP SLVMLIEREA  300
GGNPAGFAGS GYLGRFMDCL HYFAAMFDSL NDCLPAESSE RLRIEKNHLG WEIMRSVTMA  360
DGEEIMRTKK GAMERNGFEG VRLSSRSVSQ AKLLLKIKSH CSAMDEHGGG GGGFRVCERD  420
DGRAMSLGWQ ERRLITATAW RCAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.17e-46GRAS family protein